NNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATCACTCAATCGCAGAAACATTCCATGGATAAAGAA
AGCCAGGTGTGGTGGTGCATGCCTTTAATCCCAGCACTCAGGAGGCAGAG
GCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCT
AGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAAAACAAAACAA
AACAAAACAAATAAAATAAATAAATAAAAAAATAAAAATAAAGTCTCATC
ACCCATCATGCAACTGTCATAAAAGGCAAGTAAAACACTGAACATCCTGA
GATACTATAAAAAGACAACATCAACAAAGAAGGAATAAAAAATCCTGGTG
GAAAAGCCCAACAAGGAATAATAATAACAGAAAAATAGTTGACTCATATT
GTTAAAAGGCAAAAATAACTTTTAGCTCAAAAACATTGTAGGGATCAGAC
ATGGATGTCAAATTCACAAAGAGAAATGCTTTTGTTTGGGCTGAGATTCA
TCTTTAGAGACTTACCCATGTTGGGTAATTAACTGCTCTAAGACTAGTCT
ATATAACCTGCTATATTTACTCTTACCCTAATATTACCTAATTTTACTTT
TGGTAAATTAAAGGAAAAAAAAAAACCTCCAGGAGAAACAAATGTTTTGA
AGTCAGATGTTATGAAACCGGAGGGTTCCTAATGGGATATCCAGTC

TTTTTTTTCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGATCTGTAT
CCCATTTTAAAATTAGATTATTTGGTTTGTTGATGCCTAGTTTCGTGAGT
TCTTTATATATTTTTTGAAATTAACCCCTGTTAAATATAGAGTTAGTGAG
AATCTTTTCCCACTAATCTTGTGTAGGCTGCCATGTTGTCCTGTTGACAG
TGTTCTTTGCCTTAGAAAAACTTTTATACTTTATGAGGTCCCATTTATTA
ACTGTCAGTCTTAGTGGCTGTGATATTTGTGATCTCTTCAGAAAGATGTG
ACAATGCATCCAACTATATTTCCCACTTTATCTTGGATCACATTCACTGT
ATCTGGCTTTATGTTGAGGTCTTTGTTCCATTTGGATTTGGATTTTGTGT
AAGGGGATACACATAGATCTATTTGTATTCTTCTATACCCCAAAATTTAG
TTAGAGCAGCACCATTTGCAGATGCTTTCCCCTCTATTGATTAATTCTAG
CTTCTTTATAAAAAAATCAGGTCTCCATAAGTGTGTGAATTTACTTCTAA
GTCTTTAATTCAAGCTGTCTGTTTTTATGCCAATATCATGTGTTTTTGTT
GTTGTTGTTGTTNGTGGNNNGTGNGCTAAAAAAAACCCCTGTGTTTGGAT
TGGAAACCCGGAATGAATATAAATTCTTGAATTCTTTTTTTTTTAAATTT
ACTTTACTGTCG

Query= MSMg01no390_b24.b1 MSMg01no390_b24.b1 CHROMAT_FILE:
MSMg01no390_b24.b1 PHD_FILE: MSMg01no390_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:56 2005
         (544 letters)



>mm_chr1_8932720_8933663
          Length = 944

 Score = 1017 bits (526), Expect = 0.0
 Identities = 529/530 (99%), Gaps = 1/530 (0%)
 Strand = Plus / Minus

                                                                       
Query: 16  taaagaaagccaggtgtggtggtgcatgcctttaatcccagcactcaggaggcagaggca 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 taaagaaagccaggtgtggtggtgcatgcctttaatcccagcactcaggaggcagaggca 885

                                                                       
Query: 76  ggcagatttctgagttcgaggccagcctggtctacaaagtgagttctaggacagccaggg 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 ggcagatttctgagttcgaggccagcctggtctacaaagtgagttctaggacagccaggg 825

                                                                       
Query: 136 ctatacagagaaaccctgtcttgaaaaaacaaaacaaaacaaaacaaataaaataaataa 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ctatacagagaaaccctgtcttgaaaaaacaaaacaaaacaaaacaaataaaataaataa 765

                                                                       
Query: 196 at-aaaaaaataaaaataaagtctcatcacccatcatgcaactgtcataaaaggcaagta 254
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ataaaaaaaataaaaataaagtctcatcacccatcatgcaactgtcataaaaggcaagta 705

                                                                       
Query: 255 aaacactgaacatcctgagatactataaaaagacaacatcaacaaagaaggaataaaaaa 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 aaacactgaacatcctgagatactataaaaagacaacatcaacaaagaaggaataaaaaa 645

                                                                       
Query: 315 tcctggtggaaaagcccaacaaggaataataataacagaaaaatagttgactcatattgt 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tcctggtggaaaagcccaacaaggaataataataacagaaaaatagttgactcatattgt 585

                                                                       
Query: 375 taaaaggcaaaaataacttttagctcaaaaacattgtagggatcagacatggatgtcaaa 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 taaaaggcaaaaataacttttagctcaaaaacattgtagggatcagacatggatgtcaaa 525

                                                                       
Query: 435 ttcacaaagagaaatgcttttgtttgggctgagattcatctttagagacttacccatgtt 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ttcacaaagagaaatgcttttgtttgggctgagattcatctttagagacttacccatgtt 465

                                                             
Query: 495 gggtaattaactgctctaagactagtctatataacctgctatatttactc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gggtaattaactgctctaagactagtctatataacctgctatatttactc 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)