Query= MSMg01no390_c16.b1 MSMg01no390_c16.b1 CHROMAT_FILE:
MSMg01no390_c16.b1 PHD_FILE: MSMg01no390_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:00 2005
(470 letters)
>mm_chr1_105234739_105235608
Length = 870
Score = 716 bits (370), Expect = 0.0
Identities = 423/470 (90%), Gaps = 45/470 (9%)
Strand = Plus / Plus
Query: 1 gaaaatcacaaattaaggctttctcaaatatatttgggatgtactaggtatgatggttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaaatcacaaattaaggctttctcaaatatatttgggatgtactaggtatgatggttaa 260
Query: 61 agcagattccctgaagaaaataaattcaactagggaacaaccttacttcctggcataaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcagattccctgaagaaaataaattcaactagggaacaaccttacttcctggcataaat 320
Query: 121 caaagtaaactagaggacatcttctaaagtttacagacaacagtgaaaatgtattactat 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagtaaattagaggacatcttctaaagtttacagacaacagtgaaaatgtattactat 380
Query: 181 tattttcttgctgttaagttttatgagtgtttatcttttcaatgtacaataaagattcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattttcttgctgttaagttttatgagtgtttatcttttcaatgtacaataaagattcat 440
Query: 241 ggggagaaatgctgtaaacaaggcaggtctttgttgtgggacatgttaaaaccaaaccaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggagaaatgctgtaaacaaggcaggtctttgttgtgggacatgttaaaaccaaaccaa 500
Query: 301 accaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaa 360
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaa------------------- 541
Query: 361 accaaaccaaaccaaaccaaaccaaaacttaccgtgctatatccagctagctactctctg 420
||||||||||||||||||||||||||||||||||
Sbjct: 542 --------------------------acttaccgtgctatatccagctagctactctctg 575
Query: 421 ctgggcagtctcactgactctaggccaactccaggtggcagtgtccccag 470
|||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 576 ctgggcagtctcactgactctaggccaactccaggtggcagtatccccag 625
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no390_c16.g1 MSMg01no390_c16.g1 CHROMAT_FILE:
MSMg01no390_c16.g1 PHD_FILE: MSMg01no390_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:00 2005
(254 letters)
>mm_chr1_105399168_105399821
Length = 654
Score = 433 bits (224), Expect = e-126
Identities = 245/252 (97%), Gaps = 2/252 (0%)
Strand = Plus / Minus
Query: 1 catgaagttcataggtcaactagcttgctgtttctacaggacaaatagcagtgagccctt 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 451 catgaagttcataggtcaactagcttgctgtttctacagggcaaatagcagtgagccctc 392
Query: 61 atggaatgctgggactcacaaccgaggttgtactctgaccttgacacatagcatgagata 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 391 atggaatgctgggactcacaaccgaggttgtactctgaccttgacacatagcatgaga-a 333
Query: 121 -tacattactgcgtgttcacacagtagtggatgccctccaaccagacctattaattattc 179
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gtacattactgcatgttcacacagtagtggatgccctccaaccagacctattaattattc 273
Query: 180 caatgatattgatgtgtttataaaaatataaagagagtgggaatatgttttggtggatgt 239
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 272 caatgaaattgatgtgtttataaaaatataaagagagtgggaatatgtcttggtggatgt 213
Query: 240 gtggtgaagtgt 251
||||||||||||
Sbjct: 212 gtggtgaagtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space: 158025
Effective search space used: 158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
