BAC Information

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BAC

Clone NameMSMg01-390F16
Chromosome1 (Build37)
Map Location 149,276,526 - 149,276,938
singlet/doubletsinglet
Overlap genenone
Upstream geneB830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390F16.T7 (MSMg01no390_f16.b1)MSMg01-390F16.TJ (MSMg01no390_f16.g1)
ACCAG492386AG492387
length732754
length of high quality
(start - end)
403 (200 - 602)---
definitionCHROMAT_FILE: MSMg01no390_f16.b1 PHD_FILE: MSMg01no390_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:14 2005CHROMAT_FILE: MSMg01no390_f16.g1 PHD_FILE: MSMg01no390_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAACATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATC
CGCGGAATTCTGTGTGATCCAAAATGCTTCTAATAGATTTAGATGCTTAT
CAATTATGCGAGTTTTAAAAAGCGAAGTCTTTCTTAGGTCTGAATTTTAA
AAAAATACTTTTAAGCTGAATATGGGAGAAAGTGTCTTTAAACCCGTAGA
TATAGACAGAAAGATCTAGGTTTAATGTCATCCTCACAGTGAGTTTGACT
CCATGCTGATTTCATAAATGAGATCCTGTCTCAATTCAAGCAAATTCAAT
TTTACAACCTAATAAAAATAATATATTATTGCTCCTATAATTACATGGTA
TGAAGAGAGTATACAGTGTGTTTCTAAATAGGATCAGGGAAATTTTTATG
GACATCGTTGAATCATGTTTCCTATGTATCTATCCTCAGGACAATTTGAC
AGTTGTAGTCTCCACTTCACATACCTGAATTTTTTTCTCTGTTCGTATAT
TCTAAACATCTCTTTTTGTTTTATTTTATTGATTAATAACAATAATGGAC
CATTTATCATAACTCCCTGGTGATGAATACTCTCTTTTGTAACAGACATA
GAATTTCCGAGTGTTTAATAAGATAGGTTCATGTCTCCTGCTAACTAGAA
GACATTGCACTGTTCTGCAGAGATTTTCTTCACGATGTTCTTATTTTCCC
AATCTGGGACCTCATCCCAACCTATCTCCTAN
TTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGACCTTTGCAAGTA
AATGGATGGACTAAGATTATATTGAATGATATAACGCCTACTCTGAACGA
CAGATGCGATATGTTCTTTCTTTCCCATGCGAACCTCATCTCCAGATAAT
CGGATGTATGAGGGGATGCATTCGGACTCTGAAGGAGAGATGAAGGATAA
GTAATAAGAAAGCTGCTTCTATAAGTCCTCGATAATGCATATGAGTTTAT
ATTTACCGAAAATTATACTGAGGATATATACTGTGTGTGGGTATATAGCT
CATAGGAATTTACGGCATGAACTCTGACGATGCTCCCTCCAAAACATGGA
CCAAATGAAAAAAAACCCCAGTGCCTGATAAAAGGCTCTCTTCTAATGGT
TGGAAATAGAGTCCAAGTGACTGCCACACCATTATAGCCTACTGATATAG
GCCTTGGTTATCACTCATGTTGAGGGGAGTGTCTTTTCTCTTGCTGATGA
CTTCTACTCANTGGACGCAATACACAGATTGTTCTATTCTACCAGCTAAA
ATCTGTAGTTTCAGCAGATACTCTGTCATATGCTAAGGCCCCAAGTCGAT
TACACTTGCCCCCTGCGATGTAACCCCCTATGATCCATGGGTCTCGCCCA
GTTGTGTTGAGATTTCCTTAAAATTCCATAATTTGGACCATGCATATTGG
GGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_f16.b1 MSMg01no390_f16.b1 CHROMAT_FILE:
MSMg01no390_f16.b1 PHD_FILE: MSMg01no390_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:14 2005
         (403 letters)



>mm_chr1_149276361_149277163
          Length = 803

 Score =  710 bits (367), Expect = 0.0
 Identities = 397/413 (96%), Gaps = 10/413 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatagacagaaagatctaggtttaatgtcatcctcacagtgagtttgactccatgctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atatagacagaaagatctaggtttaatgtcatcctcacagtgagtttgactccatgctga 519

                                                                       
Query: 61  tttcataaatgagatcctgtctcaattcaagcaaattcaattttacaacctaataaaaat 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tttcataaatgaaatcctgtctcaattcaagcaaattcaattttacaacctaataaaaat 459

                                                                       
Query: 121 aatatattattgctcctataattacatggtatgaagagagtatacagtgtgtttctaaat 180
           ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aatatatcattgcacctataattacatggtatgaagagagtatacagtgtgtttctaaat 399

                                                                       
Query: 181 aggatcagggaaatttttatggacatcgttgaatcatgtttcctatgtatctatcctcag 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 398 aggatcagggaaatttttatggccatcgttgaatcatgtttcctatgtatctatcctcag 339

                                                                       
Query: 241 gac----------aatttgacagttgtagtctccacttcacatacctgaatttttttctc 290
           |||          |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gacaccatatgaaaatttgccagttgtagtctccacttcacatacctgaatttttttctc 279

                                                                       
Query: 291 tgttcgtatattctaaacatctctttttgttttattttattgattaataacaataatgga 350
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 278 tgttcgtatattctaaacatctctttttgttttattttattgattaatagcaataatgga 219

                                                                
Query: 351 ccatttatcataactccctggtgatgaatactctcttttgtaacagacataga 403
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ccatttatcataactccctggtgatgaatactctcttttgtaacagacataga 166


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)