BAC Information

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BAC

Clone NameMSMg01-390H16
Chromosome1 (Build37)
Map Location 122,316,207 - 122,316,366
singlet/doubletsinglet
Overlap genenone
Upstream geneInhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2
Downstream geneMarco, En1, AI848258, Insig2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390H16.T7 (MSMg01no390_h16.b1)MSMg01-390H16.TJ (MSMg01no390_h16.g1)
ACCAG492480AG492481
length753728
length of high quality
(start - end)
166 (160 - 325)244 (82 - 325)
definitionCHROMAT_FILE: MSMg01no390_h16.b1 PHD_FILE: MSMg01no390_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:24 2005CHROMAT_FILE: MSMg01no390_h16.g1 PHD_FILE: MSMg01no390_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTGACATTACAATTTGCGGGGCTAAACGACCACTATATCCACACCACCC
GCGGAATTCTTTGGATTCCCCACAGAGACCAGGCCTGTGGAGAACCTGCT
GGGTGAGGAAGGTACTTAAGGCACATTGCTAGGCTTTGCTTGCCCACACA
AGGCATTCTAGAGGTGGAAAGACTCTTCACAAGACCTTGATCTGCTAGCT
AACTGGCAGCTATCTAACAGATATCTACCAGCTCCTCCTGTTCCCTCTCC
CCTCCTCCCAACACACACACACACACACACACACACACACACACACACAC
ACACACACCAACCCACTTCTTACTTTTTTTTTTCATCAGATTAAAAACAT
GTTCTTTCTTGCTCTGTCCTTCTGTTGTCCTCCCTTCCTATCTCTCTCCT
TCCCTCCCTCCTTCTCTCCCCCCTCCATTTGTTTGTTTGTCTGTTCGTCT
CGCTGCCTGCTTCTAACGGCTGCCATCGCCGACACAGGGCCCAGGCCCTC
CTCCGCCTTGCAACCCCCCACATACACCCCCTCTACCCCGACATTCCCAC
AGCCTCTGCCCGTCCTCCCACTGCCCCTCCCCCTCTCTCTCCCACGCACC
CCGCATCGACCCCCTGAGCCCGCCCCCCTCTCCATCCCCCTCACCCCCCC
TTGACCCCCACCTCCCGACCTTCCTTCCGCCCTCCACCCCCTTCCCCCCA
TCCCTCTCCCCCTTCTCCCTACCTCCACCTCCCTACCCACCCCCCATCCC
CTN
TAAAAAACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCTTCTTGACAGTATC
AGTACCGATACTGTCAACTTTTGGCAGGACCTAGAATCATTTAGGAGACA
AACTTCTGGGTACGTGGAAGGGAGTTTCTAGATTAGACTGAAGTAGGATG
ACCTACCCTAAATGTGAAGGGCCAGGTGCATGGGCTAGGCCTGGAATCAA
TTAAAAGATTAAAATGGAGTATGCACCAGCATTCACCTCTCTCTGCTTCC
TCACCATCTGTTTCACACTCCTGCTGCTGNGACTTCCCCCACCATGATGA
CCTGCACCCTCAGACTGTGAGCCAGCACAAGCCCTCCCTCCCTGAAGCTG
CTTCCCTTAGGGGTTTGAGCAAGGTCACTGATAATCATTCATAGCAGGAG
TGAGGAGAGGGGGGTGGAGGNTGNNNNNNNNNNNNNNNNNNNNTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNNNNT
NNNTNNTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTNTC
TTTTTTTTTTTTTTTTNTTNNNNTTTNNTTNTNTTNTNTTNTTTTTTTTT
TTTTTTGTTTTTTTNTTTTNNNTNTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_h16.b1 MSMg01no390_h16.b1 CHROMAT_FILE:
MSMg01no390_h16.b1 PHD_FILE: MSMg01no390_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:24 2005
         (166 letters)



>mm_chr1_122316066_122316631
          Length = 566

 Score =  298 bits (154), Expect = 1e-85
 Identities = 160/164 (97%), Gaps = 4/164 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggtggaaagactcttcacaagaccttgatctgctagctaactggcagctatctaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agaggtggaaagactcttcacaagaccttgatctgctagctaactggcagctatctaaca 242

                                                                       
Query: 61  gatatctaccagctcctcctgttccctctcccctcctcccaacacacacacacacacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gatatctaccagctcctcctgttccctctcccctcctcccaacacacacacacacacaca 182

                                                       
Query: 121 cacacacacacacacacacacacacacaccaacccacttcttac 164
           |||||||||||||||||||||||||    |||||||||||||||
Sbjct: 181 cacacacacacacacacacacacac----caacccacttcttac 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)