BAC Information

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BAC

Clone NameMSMg01-391A01
Chromosome1 (Build37)
Map Location 115,327,802 - 115,327,967
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391A01.T7 (MSMg01no391_a01.b1)MSMg01-391A01.TJ (MSMg01no391_a01.g1)
ACCAG492880AG492881
length675846
length of high quality
(start - end)
240 (125 - 364)169 (76 - 244)
definitionCHROMAT_FILE: MSMg01no391_a01.b1 PHD_FILE: MSMg01no391_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:05 2005CHROMAT_FILE: MSMg01no391_a01.g1 PHD_FILE: MSMg01no391_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGGTCCAGTGTCACNNNNNNANTCACTATAGTCCCAGGATCCGCGGAAT
TCATGGACCTTAACCAAAGATGCAGTTGTATTATGAGACAGCTTCTCAAA
ACTATATTAATGACGTATATACATTAATTTAGGGAGTGGTGATCCCACAC
AGCTAAACTTTATTCCTTTTGCTTACAAAGTCAAACAGATTCCTGAATTC
ATGACAACCTGGAACCTAGCAGAGGGTAGATCCAGAGTGTTGGGTATTGT
AATCTCAGAGTGAGATCCCATCCAGGTAGCTGATAGTCTGTGTTTGCAAA
GGAAAGAGATCTCTGAATCCATTTGCTATGTTTAAAAAATGTACTTGCTT
TCCATTTCTAATAATCAAGCAGCTAAGGTCATTATATGCTGATTCATGGA
ATCCTCAAAAGGGAACCTGAATTTCCTATTCTGGGGTGTGTGTGTGAATT
AATTGATATGCAAATAAAAGAATGGGCTTTGTTCTTTGAGAGCTGGACTA
TCTGCATGCGCTGCCTGTGTAGCCAGCAGGACCAGAGCCACAGGCTCTCC
GCTTGAACTCCTGACTTGACCTTGAGCCATTTTTTTTTTCATGACTCTGG
GAACCCCCCTTTCTCCAAAACCCTTTCCCCCAAAACTCTAAGCCTGGNAA
TTTGGGCTAAAAAAAACCAAAAAAC
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGTAAGTGGCAAGAGGATAGGTAA
AGTGCCATTCATGCCTAAGGTGAGAGATGCATGACTTTATACCAACAGCA
TTCAACCTCTTTTGGTAGAGGATGGCCACCAAGAACCTCGAAAATAGGTC
ACTTATCCAATTCACAAGAATCCACCCCAGAAAGAGTGCTGNNAAGNNNA
AACTCTCCTTTGGAAGAAAAATGGATGCCTTGACAGAAACTTCATTCTCT
TGGGGAAAAGCTAAGCCCAGAAAAATAGGCCCCNGGGAAACAGAAAACCC
CCCTTGTTCCCTCTCCCCCCCTCCTCCTCGCCTTCCCCCTTCCCTTTCCC
CCCTCTCCCCCCCCTTTCCCCCCTTTTTCCCGCCGTATTTCCCCGCCCCT
CCTCCCCCTCCCTCCCCGATTTCTTTGCCCCTTTTTCCCCCCCCCCCCCT
TCTCCCCCCCCCCTTTCTTTTTTCCCCCCTTCCCCCCCTCCCCTCGCTCC
CTACTCCTTCTCTCTCTCCCCTCTTCCCCCTCCCCCCTTTCCTCCCTTCC
CCTCCCCCTTTTGTTCTTTCCCTCCCCCTACCTCCCTTTTCCCCCCCCCC
ATCTTCCCTCCTTCACCCTTCCCCCTCTCCTTCCTACCCCTCCTTCCCCT
CCCCCCCCCCCTCTTCCCTCTCCCTCTCATCATCTTTTATCTCCTCCCCC
CTCCCCCCTTACCTTTTCCCCTCCTCCCTCCCACCCTTCCTCCACTCCCA
CCCCCCTTAACCCCCCTTCCTCCCCCCTCCTCCCCTCTCTTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_a01.g1 MSMg01no391_a01.g1 CHROMAT_FILE:
MSMg01no391_a01.g1 PHD_FILE: MSMg01no391_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:05 2005
         (169 letters)



>mm_chr1_115327602_115328170
          Length = 569

 Score =  308 bits (159), Expect = 2e-88
 Identities = 165/167 (98%), Gaps = 2/167 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtaagtggcaagaggataggtaaagtgccattcatgcctaaggtgagagatgcatgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtaagtggcaagaggataggtaaagtgccattcatgcctaaggtgagagatgcatgac 260

                                                                       
Query: 61  tttataccaacagcattcaacctcttttggtagaggatggccaccaagaacctc-gaaaa 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 261 tttataccaacagcattcaacctcttttggtagaggatggccaccaagaacc-cagaaaa 319

                                                          
Query: 120 taggtcacttatccaattcacaagaatccaccccagaaagagtgctg 166
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taggtcacttatccaattcacaagaatccaccccagaaagagtgctg 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)