BAC Information

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BAC

Clone NameMSMg01-391B01
Chromosome1 (Build37)
Map Location 10,636,186 - 10,636,595
singlet/doubletsinglet
Overlap geneCpa6
Upstream geneMybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1
Downstream geneLOC433271, C030045D06Rik, A830018L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391B01.T7 (MSMg01no391_b01.b1)MSMg01-391B01.TJ (MSMg01no391_b01.g1)
ACCAG492928AG492929
length668784
length of high quality
(start - end)
412 (46 - 457)245 (78 - 322)
definitionCHROMAT_FILE: MSMg01no391_b01.b1 PHD_FILE: MSMg01no391_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:09 2005CHROMAT_FILE: MSMg01no391_b01.g1 PHD_FILE: MSMg01no391_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGGTCCTTCCCACCTACTGAAGGAAACACCTTTCCAATATGCCGA
TGTTTGTTGGAGGGTTTTTGTGGTCTTGTAGCAGGAAATGTGGAACTGTA
TAGTTGGTGTGGGCCCATCTGACTGTGTAACCCCATGTGGCAGAGGCTAG
TCCCACATGGTGGACCACGGCAGCACAGCTCACATGGTAGAAGTCTATGA
GTCTCACAGCAGCGAGTGGTAGTGGTTTGCAGCTGTGGTGAAAATCCACA
CAGTGCACAGTGCAACAGTGGTGGCTTTCTGCAGCTGCAGTCCACGTGGT
GTGGGCACAGTCGATTGGTCACGGTCACCTACCAGCCAAGGGCGTTCAAC
AGGTCTCCACAGCACTCCTGGGTAGCAATTCCTGGATTTTGGCATCAATG
TTGTGTTGGAATTGCAGCTCCTGCCTGGACAGACCATACCAGGCCAATAC
CGCTCCACATGGGAGGTTTATTGTTGGCGAAGATGTCCAACGGTGGTGCT
GAAGCTCGCACCACCCACACCCAACCCCTGGCACTCTCCACCCCCCCTCC
CCTCCACTTCTCTCCCGTCCCCCTCTTCTCCTCCCTCCTCCCCCCCTCTC
TCCTTTCTTCCCCCCCCG
TCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGTTGTTGGGTGATTTTGTA
ATGTTGAGCTCTTGTATATTCTTGCTGATTTTCTTTTTAATTGTTCTCTT
TTATGTGGGTTTTAAAAAATACTAAATTGATGATATTAATAGTAATAATG
AGCTGACTTCACAAAATGTTTTTCAGTTGTCAGCATTCCAGGTTTTTTTT
TTGTTTTTGTTTTTTTTGTTTTTTTGTATGTATTGCATTACTAAACTCTT
CTAGCAGCTCTGTATGTTAGACTTTTTTTTTACTTACATGCTGGTAGTGC
CCATAGACACTACTTGACTTACGCTAGCCCCATCTACTTCACGTTATATT
CGCTTCTAACATCTCCTTGTACCTCCGCTTTATCTTATTACACCGCTGAT
CTTCCCTTTTCTTGTACCCCCCCCTTGCCTTCTTCCTCTCACGTCCCTAC
CGCTCTTCCCCTCCCCACCTCTCCCCTCTCTCCTTCCTCTTCCCCGTTCT
CCTCCTTCCTCTTTATCCAGACTCTTGGACACACCCCTCTCTCCTCTTGA
TCTGACCCTTTTTCCCCCCCCCCTCCTTCCCCCTTCGCCTCATATTTTTT
CTTTCCCCCCCCCCCCTTCCCTTTTTTCTCTTTCCTTCCCCCTCCCCCTT
TTTTTCCCTTCTCTCTTTCTTCTTCCCTTCCCCTCCTTTTCCTCCCTTTC
GCATTCCCGCCTCCCCCCCCTCTCCCTTTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_b01.b1 MSMg01no391_b01.b1 CHROMAT_FILE:
MSMg01no391_b01.b1 PHD_FILE: MSMg01no391_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:09 2005
         (412 letters)



>mm_chr1_10635984_10636795
          Length = 812

 Score =  731 bits (378), Expect = 0.0
 Identities = 402/410 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattcagggtccttcccacctactgaaggaaacacctttccaatatgccgatgtttgt 62
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggaattcatggtccttcccacctactgaaggaaacacctttccaatatgccgatgtttgt 553

                                                                       
Query: 63  tggagggtttttgtggtcttgtagcaggaaatgtggaactgtatagttggtgtgggccca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tggagggtttttgtggtcttgtagcaggaaatgtggaactgtatagttggtgtgggccca 493

                                                                       
Query: 123 tctgactgtgtaaccccatgtggcagaggctagtcccacatggtggaccacggcagcaca 182
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 492 tctgactgtgtaaccccatgtggcagaggctagtcccacatggtggaccgtggcagcaca 433

                                                                       
Query: 183 gctcacatggtagaagtctatgagtctcacagcagcgagtggtagtggtttgcagctgtg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gctcacatggtagaagtctatgagtctcacagcagcgagtggtagtggtttgcagctgtg 373

                                                                       
Query: 243 gtgaaaatccacacagtgcacagtgcaacagtggtggctttctgcagctgcagtccacgt 302
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 372 gtgaaaatccacacagtgcacagtgcaacagtggcggctttctgcagctgcagtccacgt 313

                                                                       
Query: 303 ggtgtgggcacagtcgattggtcacggtcacctaccagccaagggcgttcaacaggtctc 362
           |||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||
Sbjct: 312 ggtgtgggcacagtcgattggtcacaatcacctaccagccaagggcattcaacaggtctc 253

                                                             
Query: 363 cacagcactcctgggtagcaattcctggattttggcatcaatgttgtgtt 412
           ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 252 cacagcactcctgggtagcaattcctggattttggcaccaatgttgtgtt 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)