BAC Information

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BAC

Clone NameMSMg01-391B06
Chromosome1 (Build37)
Map Location 151,517,923 - 151,661,713
singlet/doubletdoublet
Overlap geneLOC100042813
Upstream geneLOC100042792, LOC435647
Downstream genePla2g4a, Ptgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391B06.T7 (MSMg01no391_b06.b1)MSMg01-391B06.TJ (MSMg01no391_b06.g1)
ACCAG492938AG492939
length752759
length of high quality
(start - end)
543 (38 - 580)479 (80 - 558)
definitionCHROMAT_FILE: MSMg01no391_b06.b1 PHD_FILE: MSMg01no391_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:11 2005CHROMAT_FILE: MSMg01no391_b06.g1 PHD_FILE: MSMg01no391_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,661,174 - 151,661,713)(151,517,923 - 151,518,401)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGAT
CTTCTTGCCTCAAACTCACTAATGGCACTCTTTACAGGCATGTGCCAAAC
CACCTGGCTAACTACTTGTTCTTGAAGCACTGTGTCTCAGAATAATGAAA
AATAACTATTTTATGGCTTATCATAAATATTAGCTCTCAAAGAACAATGC
ATATTCATGAATTTTCAGATTATTTTAGCCTATGTATTCATGCATGAGTA
CATATTTTGAATTCTGTCTTTGGTTTGTTCACAGGTTCATGGAGAGAATC
TGGCTTTCCAGTCTGTGTTGTCAGACACTTTAGAGGCCACTTGGTTCATC
CTGGCAAATTCTGTTCCAGCTAGGTTTTCCCTGTTCACTCCAATCTACTT
GTTAGACATCAGAGTGTCTGACTCTGGTCTGAGTTTTACTGAATCCTCTA
GACGCAGTGGTTAGAATGATTCATCTGAGAGCTACAAGAGTGTTTATCTT
CTACATCAGAAGTGTAAGGCAGAAAAAAGAATGATTACCAATGCTTGGTT
TAAAGCTTCAGATTAGACTGCTACCCTGCTCTCAGGGCCTTCTGCTTCCA
AACTTTTTAAACAGTTTATAAAAATAAAATTAATCCCCCTGAAAAGTTTA
TTACCAGGAACTTACGCCAACCTTAGACTCCCCCACCTCCACCTTTTAAG
TGAGTGATTTGAGGGATTTTCCCGGNCATTTTACTACCTTCCCTTTCCCA
CN
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTTACTGCATTGATAGATG
GCCAATTTTTTGAGTCAGAGGAGCAGTTCAAAAATAGTTCTACTTACAAT
TACATCTCTAAATCTCCATTATGATCATTTATACTTTTCTCCCACCCTAT
CTCTTAGGGAAAAATGAATATTTTTGCCCAAAAGATAATAGCAAGTTCTA
TCATAATAAAAGACATTTGCATTTTGGAAGCAGAGAGATGAGTTAATGAG
GAGAGCATTAAACGCACACTCCCATGTAAACAGCCATATTCCCTAATGCT
ATCAACTGAGAGTTCACAAAGATGAAATTTCTCAGGATACTGCCAGTGTG
CGCCCGAACAGTAGGACACTGGAAAAGCTCTCTCCGTGGTGCTGCTTTAA
ACACTGTGAGTACTTTAAGATTAAAAATGTAGCTTTATCTCAGTGTGAGG
CCAATGTTAATAACTAGTCCTATTCAAGAGAAGCCTCAAGAACTCTATAA
TTGAAAGTTGCCCAATTGTGCATGGATGAGCCTCACTTTCCAGAAGCATG
ATTCATCTTTGTCAGGGTTGCACTTAAATAACAAAGTTTCAGGAAAAAGC
AGCAGGGCTTTCACTTCATGCATTATCAACCCAGAGGGCCTGAATGTGGT
TCTGCTTTTGCAAAAAAGGGCCCTGTAAATACCATGGGGGCAAAATCCGA
TTACAAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_b06.b1 MSMg01no391_b06.b1 CHROMAT_FILE:
MSMg01no391_b06.b1 PHD_FILE: MSMg01no391_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:11 2005
         (543 letters)



>mm_chr1_151660972_151661914
          Length = 943

 Score = 1006 bits (520), Expect = 0.0
 Identities = 535/540 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcctgatcttcttgcctcaaactcactaatggcactctttacaggcatgtgccaaa 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 742 gaattcctgatcttcttgcctcaaactcactaatggcactctttacaggcatgtgccaac 683

                                                                       
Query: 63  ccacctggctaactacttgttcttgaagcactgtgtctcagaataatgaaaaataactat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ccacctggctaactacttgttcttgaagcactgtgtctcagaataatgaaaaataactat 623

                                                                       
Query: 123 tttatggcttatcataaatattagctctcaaagaacaatgcatattcatgaattttcaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tttatggcttatcataaatattagctctcaaagaacaatgcatattcatgaattttcaga 563

                                                                       
Query: 183 ttattttagcctatgtattcatgcatgagtacatattttgaattctgtctttggtttgtt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttattttagcctatgtattcatgcatgagtacatattttgaattctgtctttggtttgtt 503

                                                                       
Query: 243 cacaggttcatggagagaatctggctttccagtctgtgttgtcagacactttagaggcca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cacaggttcatggagagaatctggctttccagtctgtgttgtcagacactttagaggcca 443

                                                                       
Query: 303 cttggttcatcctggcaaattctgttccagctaggttttccctgttcactccaatctact 362
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctgggttcatcctggcaaattctgttccagctaggttttccctgttcactccaatctact 383

                                                                       
Query: 363 tgttagacatcagagtgtctgactctggtctgagttttactgaatcctctagacgcagtg 422
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgtcagacatcagagtgtctgactctggtctgagttttactgaatcctctagacgcagtg 323

                                                                       
Query: 423 gttagaatgattcatctgagagctacaagagtgtttatcttctacatcagaagtgtaagg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gttagaatgattcatctgagagctacaagagtgtttatcttctacatcagaagtgtaagg 263

                                                                       
Query: 483 cagaaaaaagaatgattaccaatgcttggtttaaagcttcagattagactgctaccctgc 542
           ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 262 cagaaaaaagaatgattacaaatgcttggtttaaagcttcagattaggctgctaccctgc 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no391_b06.g1 MSMg01no391_b06.g1 CHROMAT_FILE:
MSMg01no391_b06.g1 PHD_FILE: MSMg01no391_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:11 2005
         (479 letters)



>mm_chr1_151517723_151518601
          Length = 879

 Score =  919 bits (475), Expect = 0.0
 Identities = 478/479 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgttactgcattgatagatggccaattttttgagtcagaggagcagttcaaaaatagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgttactgcattgatagatggccaattttttgagtcagaggagcagttcaaaaatagtt 260

                                                                       
Query: 61  ctacttacaattacatctctaaatctccattatgatcatttatacttttctcccacccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacttacaattacatctctaaatctccattatgatcatttatacttttctcccacccta 320

                                                                       
Query: 121 tctcttagggaaaaatgaatatttttgcccaaaagataatagcaagttctatcataataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcttagggaaaaatgaatatttttgcccaaaagataatagcaagttctatcataataa 380

                                                                       
Query: 181 aagacatttgcattttggaagcagagagatgagttaatgaggagagcattaaacgcacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagacatttgcattttggaagcagagagatgagttaatgaggagagcattaaacgcacac 440

                                                                       
Query: 241 tcccatgtaaacagccatattccctaatgctatcaactgagagttcacaaagatgaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccatgtaaacagccatattccctaatgctatcaactgagagttcacaaagatgaaatt 500

                                                                       
Query: 301 tctcaggatactgccagtgtgcgcccgaacagtaggacactggaaaagctctctccgtgg 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcaggatactgccagtgtgtgcccgaacagtaggacactggaaaagctctctccgtgg 560

                                                                       
Query: 361 tgctgctttaaacactgtgagtactttaagattaaaaatgtagctttatctcagtgtgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctgctttaaacactgtgagtactttaagattaaaaatgtagctttatctcagtgtgag 620

                                                                      
Query: 421 gccaatgttaataactagtcctattcaagagaagcctcaagaactctataattgaaagt 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccaatgttaataactagtcctattcaagagaagcctcaagaactctataattgaaagt 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)