BAC Information

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BAC

Clone NameMSMg01-391B24
Chromosome1 (Build37)
Map Location 102,481,807 - 102,482,055
singlet/doubletsinglet
Overlap genenone
Upstream geneC230078M14Rik, LOC633295, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391B24.T7 (MSMg01no391_b24.b1)MSMg01-391B24.TJ (MSMg01no391_b24.g1)
ACCAG492973AG492974
length773777
length of high quality
(start - end)
458 (56 - 513)249 (73 - 321)
definitionCHROMAT_FILE: MSMg01no391_b24.b1 PHD_FILE: MSMg01no391_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:14 2005CHROMAT_FILE: MSMg01no391_b24.g1 PHD_FILE: MSMg01no391_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCCGCTATACGACTCCTATAGGTAGAGGATCCGCGGAATTCTATCAGAC
CTTCAAAGAAGACCTGATATCAATTTTCCTCAAACTATTCAATAAAATAG
AAACATAAAGAACACTACCTAACTCATTCTATGAGTCCACAATTACTCTG
ATACCTAAACCACACAAGAAGTCAACCAAAAAAGAGAACTTCAGACCAAT
CTCGATTATAAATATCAATGCAAAAATACTCAATAAAATTCTTGCAAACC
GAAACCAAGAACACCTCAAACCATCATTCACCATGATCATGTAGGCTTCG
GTACAGAAATGTAAGCTTGGTTTAGTATTCGAAAATCTATTACCGTAATC
TACTATATAAACAAACACAAATAAAAAAAATCCCATGATCATCTTCTTAG
ATGCTGAAAAGCATTTGTTAAAATACAACACCCTTTCATGTTAAAAGTAT
TGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATAGTAAAAACAATT
TACTGTAAACCAAAAGCCAATATCAAATTAAATGGAGACATACTTGAAGC
AATCCCACTNAAATTGGGAACAAGACAAGGATGTCCACTCTCCCCATATC
TATTCCATATAGTACTCCAGTATTAGCCTAGACCATANGACCATAANAGG
AAATGAAGGAGGATTAAAAACTGGCTAAGAAGAAATAAGGGATCCCTGTC
CGCCCCTGATAATCCAAGTTACTTAAGCCACCGCAAAAATCTCCCCACAA
ACTTCCCCCCCCGAAAAACACCT
ATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTGTCTTGACTAGCACATAAAGAAGG
GAGCTACATATTCAAATTTTTGTACATGCTTAAATTTAATTTTACATGAT
CTATATTTGGTTACTTTATCTTCTTCCATCAATATTTCTTTTATAGTAAG
GACATAATCAACTCATAAAAATGGAAGTGTGATAGTGATTCAAACATATT
ACTACCAAAATTCAAATATACAGGAAACATTGCAAGGACATGAACAACAA
AAAATTTGAATGCCAAAATTGATTATTAAGATCTAGAAGTTACTACTTTC
TTATCAATTTTCCTTATATATAAAAAGGAAATTAAATAATGAACATAATA
AAAGTTCAAAATATGTAAAGAGGCCTTATGTATCAAGGGCAAATAATTTA
ATATGGGCCACTGGACAAAGCAGAGCAAAATTATTTAATTCTACACAAGC
ACAAACTCACTCACACACACACACACACACACACACACACACACACACAC
ACATGCACACACACACTATAAATATATGACATATTATGTGATATATATGC
ACCATATATATCATAGGCTGTAAAATATTTGCTCCCATTTTAAAGGAGCA
AATTTAAGCAATGTGTCTTTCTCATTTAAATGAAATAAAATTGTAAGCCC
GTGAAATCTTAATACCCCCATACTGGAATTTCCTATATGCTACCTAAACA
TTGAAAATTGGGGCCCAAGAAAACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_b24.g1 MSMg01no391_b24.g1 CHROMAT_FILE:
MSMg01no391_b24.g1 PHD_FILE: MSMg01no391_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:14 2005
         (249 letters)



>mm_chr1_102481607_102482255
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgtcttgactagcacataaagaagggagctacatattcaaatttttgtacatgctta 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgtcttgactagcacataaagaagcgagctacatattcaaatttttgtacatgctta 260

                                                                       
Query: 61  aatttaattttacatgatctatatttggttactttatcttcttccatcaatatttctttt 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttaattttacatggtctatatttggttactttatcttcttccatcaatatttctttt 320

                                                                       
Query: 121 atagtaaggacataatcaactcataaaaatggaagtgtgatagtgattcaaacatattac 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 atagtaaggacataatcaactcataaaaatggaagtgtgataatgattcaaacatattac 380

                                                                       
Query: 181 taccaaaattcaaatatacaggaaacattgcaaggacatgaacaacaaaaaatttgaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccaaaattcaaatatacaggaaacattgcaaggacatgaacaacaaaaaatttgaatg 440

                    
Query: 241 ccaaaattg 249
           |||||||||
Sbjct: 441 ccaaaattg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)