BAC Information

Click to search

BAC

Clone NameMSMg01-391C13
Chromosome1 (Build37)
Map Location 178,760,616 - 178,761,116
singlet/doubletsinglet
Overlap geneSdccag8
Upstream geneExo1, Gm104, Pld5, B020018G12Rik, Cep170
Downstream geneLOC666235, Akt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391C13.T7 (MSMg01no391_c13.b1)MSMg01-391C13.TJ (MSMg01no391_c13.g1)
ACCAG492999AG493000
length768756
length of high quality
(start - end)
475 (61 - 535)501 (78 - 578)
definitionCHROMAT_FILE: MSMg01no391_c13.b1 PHD_FILE: MSMg01no391_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:17 2005CHROMAT_FILE: MSMg01no391_c13.g1 PHD_FILE: MSMg01no391_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCCGCTATACGACTACTATTTTCACAGGATCCGCGGAATTCTCACC
TGTGGCATACCGAATGGCAGAGAAGCACCTGAAAAAATGCTCAACATCCT
TAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACA
CCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCG
TGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGC
TTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCAGAAAACTGGAT
ATAGTACTACCGTATGATCCAGCAATACCTCTCCTGGGCATATATCCAGA
AGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAG
CCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACA
GAGGAATGGATACAGAAGATGTGGTACATCTACACCATGGAGTACTACTC
AGCTATTATAAAGAATGAATTTATGAAATTCCTGGCCCAATGGATGGACC
TGGAGGGCATCATCCTGAGTGAGGTAACACCTTCCCCAAGGAACTCCCCC
CATATGTACCCCCTGATAAGCGGATATTACCCCCAAACCTAGATACCCCC
GATATTAAATACCATTCCCCCACCCCCTGGAACTCCCGAAAAATGAAAAC
CGAATGGGGGACCCTATTCCCCTCCCCATAAATGGGAAGCACAACCCCCC
TTGGAGGGGGTAACCAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACATGAAATAAATTATGGAAGAT
TTACACCATCAAATTCCTGATGTACAACAAATATATTAAGGTAAGAAAGG
AAACCCAGCTCTAGGAAATATCTAGTATTTGGGTTACTTAAGGGATAGTT
GACGTCTGCTGGTAGCCATACCACAAGGTGTTATTATTTTGTTTCTACAA
GGAATCAAAGAAAAGTCTTAGTTAAAATGGTTATCTAAGAGATTTTTCAA
AATGAGGCAATCTGTTGATATTTAAGTAAAGTACTACCTACCAATGATTA
AATGTCAATAACATATGAGGACTAAATGGAGGGAGAGAGCCAAGGCATAG
AAATATGCAGTATTTATCAACTGGTACCCAGAAGAAGTACAAATGAAGCA
GACTGGAATAAAGTTTGAGCACTTTTATTTATATATTATCACTGGCCTAG
CATCATGTAATATAAGCAACTGAGGAAGTCACAACTTGAATAGCTACTGA
GTGGTAACTTACTTTCTGAAAACAAAACAAAACAAAACCAAAAACAAACT
CCAAAATACCGATATATGTATGCTACTATTCATTGCTACTACAGCCAAAA
GCTATTGTGTAATATGCAGATTCCTTTTGCCTACCCTTAGGAAAAACCTG
CAATTAAATGTTGCGACTGACCCAATAAGTTCCAAAGCCCCGTTCCTTAT
CCAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_c13.g1 MSMg01no391_c13.g1 CHROMAT_FILE:
MSMg01no391_c13.g1 PHD_FILE: MSMg01no391_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:17 2005
         (501 letters)



>mm_chr1_178760416_178761316
          Length = 901

 Score =  953 bits (493), Expect = 0.0
 Identities = 499/501 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgaaataaattatggaagatttacaccatcaaattcctgatgtacaacaaatatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 acatgaaataaattatggaagatttacaccatcaaattcctgatgtacaacaaatatatt 642

                                                                       
Query: 61  aaggtaagaaaggaaacccagctctaggaaatatctagtatttgggttacttaagggata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aaggtaagaaaggaaacccagctctaggaaatatctagtatttgggttacttaagggata 582

                                                                       
Query: 121 gttgacgtctgctggtagccataccacaaggtgttattattttgtttctacaaggaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gttgacgtctgctggtagccataccacaaggtgttattattttgtttctacaaggaatca 522

                                                                       
Query: 181 aagaaaagtcttagttaaaatggttatctaagagatttttcaaaatgaggcaatctgttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aagaaaagtcttagttaaaatggttatctaagagatttttcaaaatgaggcaatctgttg 462

                                                                       
Query: 241 atatttaagtaaagtactacctaccaatgattaaatgtcaataacatatgaggactaaat 300
           | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aaaattaagtaaagtactacctaccaatgattaaatgtcaataacatatgaggactaaat 402

                                                                       
Query: 301 ggagggagagagccaaggcatagaaatatgcagtatttatcaactggtacccagaagaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ggagggagagagccaaggcatagaaatatgcagtatttatcaactggtacccagaagaag 342

                                                                       
Query: 361 tacaaatgaagcagactggaataaagtttgagcacttttatttatatattatcactggcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tacaaatgaagcagactggaataaagtttgagcacttttatttatatattatcactggcc 282

                                                                       
Query: 421 tagcatcatgtaatataagcaactgaggaagtcacaacttgaatagctactgagtggtaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tagcatcatgtaatataagcaactgaggaagtcacaacttgaatagctactgagtggtaa 222

                                
Query: 481 cttactttctgaaaacaaaac 501
           |||||||||||||||||||||
Sbjct: 221 cttactttctgaaaacaaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)