XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCCAG
ATCTTCAAAGAAGTCCTAATACCAATACTCTTCAAACTATTTCACAAAAT
AGAAACAGAAGGAACATTACCTAATTTGTTCTATGAAGTCATAGCTGCAC
TGATACCTAACAACATAAAGACCCAATGAACAGAACTTCAGACCAATTTC
ACTTATGAATATCAATGCAAAACTACTCAATAAAATTCTCCCAAACTGAA
TATAAGAACACATGACAATGATCATGCACCATGATCATGTTGACTTTGTC
CCAGGGATGCAGGAATGGAAATCCATCAATGTATGCCATTATATAAACAA
ACTCGAAGAAAAAAAATCACATGATCATCTCATTAAACACTGAAAAAGCA
TTTGACAAAATTCAACAACCTTCCTGTTAAAAGTCTTGGGTAGAACAGAA
ATTCAAGGCCCATACCTAAACATAGTAAAAGCAATATACAGCAAATCAGT
AGCCAACATCAAACTAAATAGAGAGAAACTTCAAGCAATCCCACTAAAAT
TAGGGATTTGACAAGAGTGCTCTCTCCCTCCCTATCTATTCAGAATACTA
CTTGAAGTTCTAGTCAGACCAATTAGACCACAAAAGGAGGTTAAAGGGAT
ATAAATTACGAAGGAAGAAATCCCACATTACTATTTGCCGAGATTATGAT
GGTTTGCTTAAGTGCCCCCCAAAATTCCCCCCGAGAAN

NNNNNTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCACTTCTACACTAAAACT
ATATTCCCTGGTTTTTGTTTTGTTAATGGTTGGAAGAATTTTTGCTTCTA
TTTACTTAGTGGTTATAGGACTAAATTGTTTATGTGATCATGATTTAACT
TTGTAAGTGGAATTTATCTAGAAAATCCTCCCTTTCATTTAGATTTTCTA
ATTTTGTGTAATACAGGCTTTTGAAGTAAGACCTAAAATTCTTTTTAGGG
AATGTAGGACCATGTTTCCAGACAGGCATAAAAACAGATAAGGTAAACTG
AGCTCAAATCCCAGGGATCTCAAAGATTTGAAGGCAGGAGTGGAGCTATT
CCCTTCTTGTCTCTATACCTGCTCTGGAACATATAACAAGGGTACCTACT
GTGAGGACCATAGCATTATGTAGCACAATACCTGCAGTTCTTTTCCATAC
AACTGAAGTATCTAGATAACCTTGAACCTTTCTCTAATGAGCTTCCCTTC
CTTGGNATTCCTTCCCCAAAAAGATATATAATTACTGGCTCACTATGAAT
AACGCGCATGTGTATGAACAATATGAAGAAGCCAGGGACATGCCCGAGAA
CTGCCTAATTAATAATTACCTCCCGGGAAGCCTTTGACCAAAGAGCTGTG
TCTAAAAACCCCAGGGCCGGCTTTCCCAC

Query= MSMg01no391_d04.g1 MSMg01no391_d04.g1 CHROMAT_FILE:
MSMg01no391_d04.g1 PHD_FILE: MSMg01no391_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:20 2005
         (490 letters)



>mm_chr1_49914148_49915037
          Length = 890

 Score =  857 bits (443), Expect = 0.0
 Identities = 478/490 (97%), Gaps = 1/490 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcacttctacactaaaactatattccctggtttttgttttgttaatggttggaagaatt 60
           |||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 202 tgcacttctaca-ttaaactatattccctggtctttgttttgttaatggttggaagaatt 260

                                                                       
Query: 61  tttgcttctatttacttagtggttataggactaaattgtttatgtgatcatgatttaact 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgcttctatttccttagtggttataggactaaattgtttatgtgatcatgatttaact 320

                                                                       
Query: 121 ttgtaagtggaatttatctagaaaatcctccctttcatttagattttctaattttgtgta 180
           ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtacgtggaatttatctagaaaatcatccctttcatttagattttctaattttgtgta 380

                                                                       
Query: 181 atacaggcttttgaagtaagacctaaaattctttttagggaatgtaggaccatgtttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacaggcttttgaagtaagacctaaaattctttttagggaatgtaggaccatgtttcca 440

                                                                       
Query: 241 gacaggcataaaaacagataaggtaaactgagctcaaatcccagggatctcaaagatttg 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacaggcataagaacagataaggtaaactgagctcaaatcccagggatctcaaagatttg 500

                                                                       
Query: 301 aaggcaggagtggagctattcccttcttgtctctatacctgctctggaacatataacaag 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggcagaagtggagctattcccttcttgtctctatacctgctctggaacatataacaag 560

                                                                       
Query: 361 ggtacctactgtgaggaccatagcattatgtagcacaatacctgcagttcttttccatac 420
           || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 ggcacctaatgtgaggaccatagcatcatgtagcacaatacctgcagttcttttccatac 620

                                                                       
Query: 421 aactgaagtatctagataaccttgaacctttctctaatgagcttcccttccttggnattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 aactgaagtatctagataaccttgaacctttctctaatgagcttcccttccttggtattc 680

                     
Query: 481 cttccccaaa 490
           ||||||||||
Sbjct: 681 cttccccaaa 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)