Query= MSMg01no391_d18.b1 MSMg01no391_d18.b1 CHROMAT_FILE:
MSMg01no391_d18.b1 PHD_FILE: MSMg01no391_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:22 2005
(525 letters)
>mm_chr1_108692302_108693226
Length = 925
Score = 922 bits (477), Expect = 0.0
Identities = 509/525 (96%), Gaps = 10/525 (1%)
Strand = Plus / Plus
Query: 1 gaattcatggggattgtgccaacaggctcgctctaacctaaggttcttggcctattcacc 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcatggggatggtgccaacaggctcgctctaacctaaggttcttggcctattcacc 260
Query: 61 ggatacctggacgtttttgtttatcagcgtaaggaactgagaaggcaaaccttattctaa 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatacctggacgtctttgtttatcagcgtaaggaactgagaaggcaaaccttattctaa 320
Query: 121 actggtccggagtactgctttgggaaaaacaataacaaaaacatgaacaaaaacaaacaa 180
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 actggtccggagtactgctttgggaaaaacaataacaaaaaca--------aacaaacaa 372
Query: 181 caaaaaaaaaacccttttcctttcttcttggtggacagactggagatcttcctggttgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 --aaaaaaaaacccttttcctttcttcttggtggacagactggagatcttcctggttgga 430
Query: 241 gagatcggcccagttcggcccaaactccgctgttttgttttccaatctcacaagcaaacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gagatcggcccagttcggcccaaactccgctgttttgttttccaatctcacaagcaaacc 490
Query: 301 aagagtcccacagaccgtgaggctgaggcgatgccaaggccggccccgctgggaagcgcc 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aagagtcccacagaccttgaggctgaggcgatgccaaggccggccccgctgggaagcgcc 550
Query: 361 ccttcgcccgggtcccgtcagcgcgggcccgtcctcctctgccggggacaggggcgcggc 420
||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 551 ccttcgcccgggtcccgtctgcgcgggcccgccctcctccgccggggacaggggcgcggc 610
Query: 421 cgcttctcagtcccccgcccccactccttccccgcgggctccggctctccagaggggccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cgcttctcagtcccccgcccccactccttccccgcgggctccggctctccagaggggccc 670
Query: 481 agaggagcccagaaggaccgcggtacctgcaggttggtgttcgtg 525
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 agaggagcccagaaggaccgcggtacctgcaggttggtgttcgtg 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no391_d18.g1 MSMg01no391_d18.g1 CHROMAT_FILE:
MSMg01no391_d18.g1 PHD_FILE: MSMg01no391_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:23 2005
(445 letters)
>mm_chr1_108880493_108881337
Length = 845
Score = 830 bits (429), Expect = 0.0
Identities = 441/445 (99%)
Strand = Plus / Minus
Query: 1 ctaattcaggagaatagagcctgccctatcaaaagagaaggtttgtagggcagtgcacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ctaattcaggagaatagagcctgccctatcaaaagagaaggtttgtagggcagtgcacca 586
Query: 61 gggattggtaatctctaatttcccacactaggagaggtactcattgcctgattgcttcta 120
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 585 gggattggtaatctctgatttcccacactaggagaggtactcgttgcctgattgcttcta 526
Query: 121 ccttcctagctagtcttgagagttcaacatcactttgtaacagaaagattcagaagactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ccttcctagctagtcttgagagttcaacatcactttgtaacagaaagattcagaagactc 466
Query: 181 tgaattcatgtgataatcaaatggtacacaccaagggctgccactggaccttactcatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tgaattcatgtgataatcaaatggtacacaccaagggctgccactggaccttactcatct 406
Query: 241 acttccttatcaattaataaagagattgaattgtctagcctcagctcccaaaatctcctg 300
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 acttcctcatctattaataaagagattgaattgtctagcctcagctcccaaaatctcctg 346
Query: 301 aggaagggacagagctggctcatggtgaaagagtgcaggttagacctgcctaaagctgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aggaagggacagagctggctcatggtgaaagagtgcaggttagacctgcctaaagctgta 286
Query: 361 agtcaacttccaggcagttctgaagctctccacccagaagaagggcgtctgtcctaggtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 agtcaacttccaggcagttctgaagctctccacccagaagaagggcgtctgtcctaggtc 226
Query: 421 agatgccttgtctagtcctcaggaa 445
|||||||||||||||||||||||||
Sbjct: 225 agatgccttgtctagtcctcaggaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space: 363225
Effective search space used: 363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
