BAC Information

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BAC

Clone NameMSMg01-391E09
Chromosome1 (Build37)
Map Location 114,169,180 - 114,169,513
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247, EG626897
Downstream geneLOC666615, LOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391E09.T7 (MSMg01no391_e09.b1)MSMg01-391E09.TJ (MSMg01no391_e09.g1)
ACCAG493086AG493087
length769853
length of high quality
(start - end)
334 (70 - 403)---
definitionCHROMAT_FILE: MSMg01no391_e09.b1 PHD_FILE: MSMg01no391_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:26 2005CHROMAT_FILE: MSMg01no391_e09.g1 PHD_FILE: MSMg01no391_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCACCAAATCCCCGGAATTCTACT
ACATTTTGCGTTAATTTTCAATATAATGCCAGCCTTCAGGATTGGAGAAA
GATCTACCAATATTTGAAAGAAAATTCTACTGTCAGAAAAAATAATAAAC
AATTACAATAACAAGTGCTGGACACATTTAAAAATAATTTCATCTGACAG
TACGTCTGGTGTTTCTCAAATATTAGCTGATAAATTGTCAGGCATGGATC
CTAAAACTTGACTACAGAGTGTAACTTACTGCAGTTGGAGAAGCCACTCT
TGCTTTACTTATTTTTATTCTTCTAATTGGCATTGTTGGACTAGCTAAAT
ATCAATGTTGCTTTCATAAGCACAATTTGAAAGTGTGGTCCTTGTAGGAA
AATCTTCTACAAACTAAATTAAAACAATATAAAAGGAAGAAACTTTAGAG
AAATGGCATGAGGTAACTGTGCCCAGCCTGCCTACTGTGAGGTGACTTAA
GAATATATGTAAATCCCACGACACTGGACCACTGAGAAAACATATACTTT
CCCCCCCCACAAGCCTGATGTTCCTGCCCAGCAAGTTGCGCGCCCGAAAA
AAGACCTCCCTGGCCCTTTCCTCGTGAGAAACCACCTTGGTTTCTCTCAC
CACATCCCCCTCTAAAAAATTTGATTGCCCAAAACGCCTTACTCCCCACC
GAAGTTTTTCCCCCCCCCCCCTCCTTCCCCACAAACAAAAATACCCTCTC
AAATCATACCCCTTGGCAC
TCCGAAGATAGGGGTAGCCTGGCGGCGCCTGTTCACAACTTTAGGTGAAC
TATAGATTTACCAAAACATTCTTTGGNGNGNGTGTGTGTGTGTGCGCGTG
CCTCAACACAACTAAACCAACTTACCCACTACATAACAAAAACCCAAAAC
CTCACTTTTTCCTCGCGGGGGGGCTTATTATACCCTACTTACTCCCCCCA
AACCCCTCCCCCCCCCCTCCACATCTCCTCCCCTCCCCTCTCTCCATTTT
CTTCTCTTCAAACAAAAATCAAACCACTAAAACACTACTTACTCTCATCC
CCAACACCCCACAACAACCCCCTTCTTAATACTTTCAACAAAAAAAACCC
AGCCACCAAAAAACCACATTCTCTCTTTCTCCTTTCCTTTACCTCCTACC
AAATTAACCATACACCACCCCCAATCCCACACTTCACACCAACAATAATA
CAATAAACTAACAAACAAAAACCAACCCATTTTTAATTCCACAGAAATTC
ACCCCGTACCCCCTTACCCCTCTCCCCCAAATATTATTACCCTCATAACA
CCCTATAACATTTCCAAAATTACTATAAAATAAAACCATATATTCCCATC
TCCCCATTTATCACACTACCACTATCCCATATAATATCATTACCTACCCA
TTCCACCACCTTCTCCCACCCTCCATCTCCCTTCCTTTCACCCTCTCCCC
TACCCTTACAATCCACTCATNCCATTTAACCACCTCAAAAAATAACCCAA
ACAATCATCAAATCCCCCCACCCCCAACCTACTTATCCCACCTCCATTTA
CATATACTCTTCCCCCCCCACAACACACTTCTCTAAATCTAACCAAACAA
ATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_e09.b1 MSMg01no391_e09.b1 CHROMAT_FILE:
MSMg01no391_e09.b1 PHD_FILE: MSMg01no391_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:26 2005
         (334 letters)



>mm_chr1_114168980_114169713
          Length = 734

 Score =  507 bits (262), Expect = e-148
 Identities = 316/334 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatataatgccagccttcaggattggagaaagatctaccaatatttgaaagaaaattcta 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 aatataatgccagccttcaggattggagacagatctaccaatatttgaaagaaaattcta 260

                                                                       
Query: 61  ctgtcagaaaaaataataaacaattacaataacaagtgctggacacatttaaaaataatt 120
           ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 261 ctgtcagaaaagataataaacaattgcaataacaagtgttggacacatttaaaaataatt 320

                                                                       
Query: 121 tcatctgacagtacgtctggtgtttctcaaatattagctgataaattgtcaggcatggat 180
           ||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 321 tcatctgacagtatgtctggtgtttctcaaatattagctgataaattgtctggtatggat 380

                                                                       
Query: 181 cctaaaacttgactacagagtgtaacttactgcagttggagaagccactcttgctttact 240
           ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 cctaaaactggactccagagtgtaacttactgcagttggagaagccattcttgctttact 440

                                                                       
Query: 241 tatttttattcttctaattggcattgttggactagctaaatatcaatgttgctttcataa 300
           ||||   ||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 441 tattagcattcttctaattggcattgttggactagctaaatatcaatgctactttcataa 500

                                             
Query: 301 gcacaatttgaaagtgtggtccttgtaggaaaat 334
           ||||||||||||| || ||||||||| |||||||
Sbjct: 501 gcacaatttgaaaatgaggtccttgtgggaaaat 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)