BAC Information

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BAC

Clone NameMSMg01-391I21
Chromosome1 (Build37)
Map Location 151,677,166 - 151,677,461
singlet/doubletsinglet
Overlap genePla2g4a
Upstream geneLOC100042792, LOC435647, LOC100042813
Downstream genePtgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391I21.T7 (MSMg01no391_i21.b1)MSMg01-391I21.TJ (MSMg01no391_i21.g1)
ACCAG493299AG493300
length779802
length of high quality
(start - end)
249 (62 - 310)295 (73 - 367)
definitionCHROMAT_FILE: MSMg01no391_i21.b1 PHD_FILE: MSMg01no391_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:49 2005CHROMAT_FILE: MSMg01no391_i21.g1 PHD_FILE: MSMg01no391_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAAACGACTACTATAGGTCGAGATCCGCGGAATTCTTTGTTCA
TCTCTGAGACCCATCTTTTAAGGGGTTTATTTGATTTTCTGGAGTCCACC
CTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGACTTAAG
ATAGGTAAAGATCCTTTCCCAATATGTTGGTGGTCTTTTTGTCTTATTGA
CAGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAGGTCCCATTTG
TCAATCCTTGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTT
TTTCCCTTGCCCTTATCTTCAAGACTTTTCCCCACTTTCTCCTCTATAAG
TTTCAGTGTCTCTGGATTTATGTGAAGTTCCTTGATCCACTTAGATTTGA
CCTTACCACAAGGACAGAGGAATTGGTCGATTCGCATTCTTCTACATGTT
AACAACCAGTTGTGCCAGCACCATTTGTTTGAAATGCTGTCTTTCTTCCC
CTGGATGGTTTTAGCTCCCTTGTCGAAAATCAAGGGACCTTAGGGGGGTG
GGTTCTTCTCCTGGGGCTCTCATTCCATTCCCTTGGGCCACTTGCCCGGC
CCAATCCAGGACCATGGCGGTTTTTATACAAATTGCTCTGCCTAAAGTTT
TTTTTCCGGCCGGGGATTCCCCCCCAGCCCTTTTATCCTTGAAAAAAATT
TTTTTTTCCCCAATCTTTTGGCCCCCCCCCCAAGATTTCCAAATGCCCTT
TCTCCTCTNTGAAATTAGCCCCCATTTCC
CAATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGTGGCTTGATCATCCCAGCACAGAAA
TTACACAGTGGGTTTACTTAGAAACTCCTTATTGAAGAATTTTCTTGCTT
CAACATTACTGAGGGAAACAGAGCAACGAGATGGGTTCTGTCTTCTGTAT
TCAATGCTCTCAACAATGGCATCCTTTATCACCTGCCAAAAGACACAGAA
AATTAATGATGAGCACAGCTATAAATCTCTGAAACATTCGTTGGTTGAAA
ACAAAAGCCTCGTTTCTTTCTTTCTTTTATTTTCTTTGCAAGTGTGTGTG
TGTGTGGTGTATGTGTGCTGTGCCTTTCCCCCCCCTTTCTCTTTCTCCCC
CCCTTTTCCCCCCCCCCCCCCCTTTTTCTTTTCCCCCCCCCCCTCCCTCC
CTTTTTCTTTCCCCTCTTCCCTTCTCCCCCCTTCCCCTTCTCCTTTTCTT
CTCCCTTCTCCCCCCTTTCTCCCTCCCTTCTTCCTCCTCTTCCCTCCTTT
TCCCCTCTCCCCTTTTTCTCTTTCCCTCCCCCTCTCTTTCTTTCTTCCCC
TCCTTCCCTTTTCTCCCCCTCTCTTCCCTTCTTTCTCCCTCCCCCTCCCT
TTCTTCCCCTCTTTCCCCTCCTTTCTTCTTTTTCTTTCCCCTCCCTCTTT
CCCTCCCCCCCCTTCTCTCCCCTCCTTTCCCCCCCCTCCCCTTTTCTTTT
CCTTTTCCCCCCCCCTTCGCCCCTTGCCCTCTCCTTCTTCCTCTTCTCTT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_i21.g1 MSMg01no391_i21.g1 CHROMAT_FILE:
MSMg01no391_i21.g1 PHD_FILE: MSMg01no391_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:49 2005
         (295 letters)



>mm_chr1_151676963_151677657
          Length = 695

 Score =  545 bits (282), Expect = e-160
 Identities = 291/296 (98%), Gaps = 4/296 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   tggcttgatcatcccagcacagaaattacacagtgggtttacttagaaactccttattga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tggcttgatcatcccagcacagaaattacacagtgggtttacttagaaactccttattga 263

                                                                       
Query: 64  agaattttcttgcttcaacattactgagggaaacagagcaacgagatgggttctgtcttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agaattttcttgcttcaacattactgagggaaacagagcaacgagatgggttctgtcttc 323

                                                                       
Query: 124 tgtattcaatgctctcaacaatggcatcctttatcacctgccaaaagacacagaaaatta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtattcaatgctctcaacaatggcatcctttatcacctgccaaaagacacagaaaatta 383

                                                                       
Query: 184 atgatgagcacagctataaatctctgaaacattcgttggttgaaaacaaaagcctcgttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgatgagcacagctataaatctctgaaacattcgttggttgaaaacaaaagcctcgttt 443

                                                                   
Query: 244 ctttctttcttttattttctttgcaagtgtgtgtgtgtgtg----gtgtatgtgtg 295
           |||||| ||||||||||||||||||||||||||||||||||    |||||||||||
Sbjct: 444 ctttctgtcttttattttctttgcaagtgtgtgtgtgtgtgtgtggtgtatgtgtg 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)