BAC Information

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BAC

Clone NameMSMg01-391J02
Chromosome1 (Build37)
Map Location 103,856,089 - 103,856,332
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041909, LOC100040993, LOC383650
Downstream geneLOC100041056, LOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391J02.T7 (MSMg01no391_j02.b1)MSMg01-391J02.TJ (MSMg01no391_j02.g1)
ACCAG493309AG493310
length724786
length of high quality
(start - end)
418 (59 - 476)244 (78 - 321)
definitionCHROMAT_FILE: MSMg01no391_j02.b1 PHD_FILE: MSMg01no391_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:50 2005CHROMAT_FILE: MSMg01no391_j02.g1 PHD_FILE: MSMg01no391_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCCGCTATACGACTACTATAGGTCGAGGATCCGCGGAATTCTGCACTC
AATCCTCTGGCCCTGGTATTTCTTTGGTTGGGAGGTTTTTAATGTCTTCT
ATTTCTTTATGTATTCTGAGATTATTCAGATAGTTTACATGATCTTGATT
TAACTTTGGTATGAGGTATCAGTATAGAAGTTTATACATTTAATTTAGAT
GTTCCAGTTTTATATAGTGTAGGTTTTTGTAGCAGGTTATGATGATTTTT
TTTTAATTTCCTCAATTTCTGTTGCCATTTCTCCCTCTTCATTTCTGATT
TTGTTATTTTGGATTCTGGATCTGTGCCCTTTAGTTAATTTGGCTAAGGT
ATTATCTCTCTTGTTGATTTTCTCAAAGAGTCAGCTCTTGGTTGTGTTGA
TTTTTCGCACCCTATTCTTTGTTTCTAATTGGTTGAATTTTGCCCTGAGC
TTGACTATCCTCTTCCTTATACTCCTCTTGGGTATATTTGCTACTTTCTG
TTCTAGTGATTTCCGGTGTGTTGCTCCGCTGCTTGTATGAGATCTCTTCA
ATTCCCCTACCCCGGCCCTTACCGCCACGCCTTTTCCCCCCACCACTGCT
TTCATTCTCCCCCCACCCGCGCTTTTGATGCCCCCCCCCTTCCCCGGACC
CTGTTTCTTTTCCCCCCCCCTCCCCGCTTACTCCCCGCCAATTTTTCACC
TCCCCCCTAATCGCCCCTCCCCCC
NTTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAAAATACACAAAGGTTGTT
ATATGTATGTATCTGGGTAATTATCTAGGATAAATGTCTTTATATTTCAT
CTACTTTCCAAAATATGAACATGATACAGTAAGAGAAGGAAGAAAAGGCT
GTGCAAATTTCATCATCCTAAATGTGCTCTGGAAGAACCAAGCCTATTCT
AAAAGAGTAATATGTTCTTTTTCCACTCATGACAAGGTGAGTTAGGCTGC
TGAAACCTGAAGGGGTGAGAAATTTTTTTTTAAAGAGAATAGCATTACAG
AATATAAAAGACAAGTACTGACAAATAACGAGAACATTAAAGTTGTCATC
ATTTTGCCAGTGGCCAAGTATCACAGTACCGAACAATATGACATTAATAG
GGATGAACACTTTTAGTATACAGGGAACAGATTCTCCCTACCATCCTCTT
CACAGTCTATCCCTTTTGCCTTTTCCTCCATTCCTATCGCTACCCCTTTT
TCCCCTATATTATCCCCCTCATCCCATCTCGCTTTAACTCCCCCCTTCTG
TTTCCTTTCTGTCAACTCCTTTTCGCCCCCCCCTTCCCCTTTTTTCATCC
ATTTTCTTGTCCCCTTTGACCCCCTCCTCTTTCCTCCCCCCCCCTTTCCC
TGTTTCTCTTCTTTCTTTTGCTCTCTCCCCTCCCCTATCTCCCTTTTCTT
CCCTATTCCTTCCCTCTTTCCCCCTCCCTCTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_j02.g1 MSMg01no391_j02.g1 CHROMAT_FILE:
MSMg01no391_j02.g1 PHD_FILE: MSMg01no391_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:50 2005
         (244 letters)



>mm_chr1_103855889_103856532
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgaaaatacacaaaggttgttatatgtatgtatctgggtaattatctaggataaatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgaaaatacacaaaggttgttatatgtatgtatctgggtaattatctaggataaatgt 260

                                                                       
Query: 61  ctttatatttcatctactttccaaaatatgaacatgatacagtaagagaaggaagaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 261 ctttatatttcatctactttccaaaatatgaacatgatacagtaaaagaaggaggaaaag 320

                                                                       
Query: 121 gctgtgcaaatttcatcatcctaaatgtgctctggaagaaccaagcctattctaaaagag 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgtgcaaatctcatcatcctaaatgtgctctggaagaaccaagcctattctaaaagag 380

                                                                       
Query: 181 taatatgttctttttccactcatgacaaggtgagttaggctgctgaaacctgaaggggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatatgttctttttccactcatgacaaggtgagttaggctgctgaaacctgaaggggtg 440

               
Query: 241 agaa 244
           ||||
Sbjct: 441 agaa 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)