Query= MSMg01no391_j24.b1 MSMg01no391_j24.b1 CHROMAT_FILE:
MSMg01no391_j24.b1 PHD_FILE: MSMg01no391_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:54 2005
(266 letters)
>mm_chr1_5749575_5750239
Length = 665
Score = 420 bits (217), Expect = e-122
Identities = 246/257 (95%), Gaps = 5/257 (1%)
Strand = Plus / Plus
Query: 3 gaattcttttatttttgc-catactatgcttcctatcatggttgaaaacttggcactgta 61
||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcttttacttttgcacatactgtgcttcctatcatggttgaaaacttggcactgta 262
Query: 62 agtgactacgtgttaagattgtagttggaaaactgttttaattctttgaatagaggttta 121
|||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 263 agtgactatgtgttaagattgtagctgggaaactgttttaattctttgaatagaggttta 322
Query: 122 aaaagtttaaatgactttgacagatattttcttcattaaaatattatttgtaaatccttt 181
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaaagtttaaatgactttgaca--tattttcttcattaaaatattatttgtaaatccttt 380
Query: 182 agaaaactttgagttctttgtttattttttattacacgtgtgtgtgtgtgtgtgtatgtg 241
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 381 agaaaactttgagttctttgtttattttttattac--gtgtgtgtgtgtgtgtgtgtgtg 438
Query: 242 tgtgtgtgtgtgtgtgt 258
|||||||||||||||||
Sbjct: 439 tgtgtgtgtgtgtgtgt 455
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 665
Length adjustment: 9
Effective length of query: 257
Effective length of database: 656
Effective search space: 168592
Effective search space used: 168592
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no391_j24.g1 MSMg01no391_j24.g1 CHROMAT_FILE:
MSMg01no391_j24.g1 PHD_FILE: MSMg01no391_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:54 2005
(249 letters)
>mm_chr1_5905878_5906526
Length = 649
Score = 474 bits (245), Expect = e-138
Identities = 248/249 (99%)
Strand = Plus / Minus
Query: 1 cgggactgtggttcccaagtgcagcccgaaatcctgaggccccttccaggcattcagtac 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 449 cgggactgtggttcccaagtgcagcccgaaatcctgaggcccattccaggcattcagtac 390
Query: 61 cacaggccctacccaggactgataccacaggccctaaccaggactgatccgggatttgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cacaggccctacccaggactgataccacaggccctaaccaggactgatccgggatttgcc 330
Query: 121 cggccttgaggtgaggctggtgtgtagcatgcctgaggacagcttgggccagggcacctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cggccttgaggtgaggctggtgtgtagcatgcctgaggacagcttgggccagggcacctt 270
Query: 181 actattttgtccccacagctgagggcagggcttgacacctgaacgtagggtaaatggtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 actattttgtccccacagctgagggcagggcttgacacctgaacgtagggtaaatggtgg 210
Query: 241 ggcagtgtt 249
|||||||||
Sbjct: 209 ggcagtgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
