BAC Information

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BAC

Clone NameMSMg01-391K18
Chromosome1 (Build37)
Map Location 158,554,275 - 158,698,473
singlet/doubletdoublet
Overlap geneAbl2, Tor3a, C530043G21Rik, LOC433368
Upstream geneLhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026
Downstream geneRalgps2, Angptl1, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391K18.T7 (MSMg01no391_k18.b1)MSMg01-391K18.TJ (MSMg01no391_k18.g1)
ACCAG493389AG493390
length740800
length of high quality
(start - end)		460 (64 - 523)244 (72 - 315)
definitionCHROMAT_FILE: MSMg01no391_k18.b1 PHD_FILE: MSMg01no391_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:58 2005CHROMAT_FILE: MSMg01no391_k18.g1 PHD_FILE: MSMg01no391_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,698,016 - 158,698,473)(158,554,275 - 158,554,517)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ACGAGTTAACTTCATGCTACTCATACAATTTTTATGTACAATTTTATATA
TGTATGAAAATAAAAAGAGAACTTTGGGAGGGGAAAATAATCCTGAGGAT
ATGAAGGAAATCCTCCAGTGAGAGGCCCTTGGCCCCTTCAGTTCTCCCAA
GGACACATGCATGTCACCTCAGTGTCTTTCAAGCCAGGCTGGGCTATGAG
TCCAAGTTGACCCCAGTGTGCTAGCTGCTTCCTTGGGTTGCCCAGAAATG
AGAATTTTGCTGTGTTGTCTCCCTTGCTAGGTCAAGGTAACGAGTGCCTT
GCTTGTTACCTTGAGTAGGCTCCTCATACTTTTTTTGGAAAGGACACAGG
CTGGTGTAGCTCCCTGATTGTGTGATGTGTGGGTCCCAGGATGTCAGATA
CTGGGGGGTTGTTTGTAGCATCTCTAGGAGGATCCATGGCTTCCTGTGGC
ACTCAGCTCCGGACAGGAGGGATAGGAAGCAGGGCTGGAACCACTTGTCA
TAAGGAGACAGGAGGCATTGAGTGTCTTGGGAATCCCGCCCGAAGGCCAA
GATTGGACACTGGCGCGACTACCTGATGTGCCGAAACACACCACCTGGGT
CCCCGAGCTCTGGAGCCTCTTGAAGGGCATCAAGGCAAAACCTCCCCCCC
CAGTGGCCCCAGTCCCCCTCTTGTCCTCTCAGGAACCCTG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATAGAAAAGCTGTATCTCCTGGAAAGAA
GAGTGTCAGGTGCTGCAGAGTGGCCTTAGATGAACATTTGCTCTAGTCTG
TGCTGCAGGTGTGGGGCAGAGTGTATGTCAAAGTCCACACTAGATAGTTC
CACTTTTAATAAATACAACCTCAAGAAATTCAAGCTGATAGAAAGATTCA
CCAAGTGTTTGGAATTTTGGGTTCCAACTTAAGAGTTATTTTCTGTTTCC
ATAGACTAATTTTATATTTTTGGCAAAGAGTGAGTCATTGTTATGGGAAA
CAGGAAGAAACTGAGAAATGGGAACTTTTAAACCTCGAGTCCTGGAAACA
CTTGTGCTTTAAGAGTCCTTGCCAGCCCCCACTGCTCCTCTAAACAGTTT
TCTTGCTGAAAACTCTTGGTTGAGTCTAGGGCCTTGGGAGGTGTTTGCTT
ATATTGATGGCTTTGTTGCTTTGGTATCATCTGAACATTTAAGCAACTTT
GTATTTTCACATGATGTCCTGTTCCTTAACACTGAATAATTACGCATGCA
TGTATGTATGCATGCCCCGTTTGCCTCCCCCTTCTCCTTTTTTCTATTTT
TTTTTTTTTTTTCCCCCCTCTCCTTTTTTTCCCTTTTCCTTTTCTCCCCC
CCCCCCCTTTTTTTTTCCCCTCTCCCTTTTTTCTCCCCCCCTTCTCCTTC
TTCCTTCCCTTTTTTCTTCCTTCCTCCCTTTTCCCCCCTTTTCATCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_k18.b1 MSMg01no391_k18.b1 CHROMAT_FILE:
MSMg01no391_k18.b1 PHD_FILE: MSMg01no391_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:58 2005
         (460 letters)



>mm_chr1_158697814_158698673
          Length = 860

 Score =  886 bits (458), Expect = 0.0
 Identities = 458/458 (100%)
 Strand = Plus / Minus

                                                                       
Query: 3   gctactcatacaatttttatgtacaattttatatatgtatgaaaataaaaagagaacttt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gctactcatacaatttttatgtacaattttatatatgtatgaaaataaaaagagaacttt 601

                                                                       
Query: 63  gggaggggaaaataatcctgaggatatgaaggaaatcctccagtgagaggcccttggccc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gggaggggaaaataatcctgaggatatgaaggaaatcctccagtgagaggcccttggccc 541

                                                                       
Query: 123 cttcagttctcccaaggacacatgcatgtcacctcagtgtctttcaagccaggctgggct 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cttcagttctcccaaggacacatgcatgtcacctcagtgtctttcaagccaggctgggct 481

                                                                       
Query: 183 atgagtccaagttgaccccagtgtgctagctgcttccttgggttgcccagaaatgagaat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atgagtccaagttgaccccagtgtgctagctgcttccttgggttgcccagaaatgagaat 421

                                                                       
Query: 243 tttgctgtgttgtctcccttgctaggtcaaggtaacgagtgccttgcttgttaccttgag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tttgctgtgttgtctcccttgctaggtcaaggtaacgagtgccttgcttgttaccttgag 361

                                                                       
Query: 303 taggctcctcatactttttttggaaaggacacaggctggtgtagctccctgattgtgtga 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 taggctcctcatactttttttggaaaggacacaggctggtgtagctccctgattgtgtga 301

                                                                       
Query: 363 tgtgtgggtcccaggatgtcagatactggggggttgtttgtagcatctctaggaggatcc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgtgtgggtcccaggatgtcagatactggggggttgtttgtagcatctctaggaggatcc 241

                                                 
Query: 423 atggcttcctgtggcactcagctccggacaggagggat 460
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atggcttcctgtggcactcagctccggacaggagggat 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no391_k18.g1 MSMg01no391_k18.g1 CHROMAT_FILE:
MSMg01no391_k18.g1 PHD_FILE: MSMg01no391_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:58 2005
         (244 letters)



>mm_chr1_158554075_158554718
          Length = 644

 Score =  439 bits (227), Expect = e-128
 Identities = 239/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatagaaaagctgtatctcctggaaagaagagtgtcaggtgctgcagagtggccttagat 60
           ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tatagaaaagctgtacctcctggaaagacgagtgtcaggtgctgcagagtggccttagat 260

                                                                       
Query: 61  gaacatttgctctagtctgtgctgcaggtgtggggcagagtgtatgtcaaagtccacact 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacattggctctagtctgtgctgcaggtgtggggcagagtgtatgtcaaagtccacact 320

                                                                       
Query: 121 agatagttccacttttaataaatacaacctcaagaaattcaagctgatagaaagattcac 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatagttctacttttaataaatacaacctcaagaaattcaagctgatagaaagattcac 380

                                                                       
Query: 181 caagtgtttggaattttgggttccaacttaagagttattttctgtttccatagactaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagtgtttggaattttgggttccaacttaagagttattttctgtttccatagactaatt 440

              
Query: 241 tta 243
           |||
Sbjct: 441 tta 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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