Query= MSMg01no391_n16.b1 MSMg01no391_n16.b1 CHROMAT_FILE:
MSMg01no391_n16.b1 PHD_FILE: MSMg01no391_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:12 2005
(482 letters)
>mm_chr1_32349201_32350079
Length = 879
Score = 625 bits (323), Expect = 0.0
Identities = 407/441 (92%), Gaps = 17/441 (3%)
Strand = Plus / Minus
Query: 51 agctatgtgttaaagacatttcaggcttattaaaaatagatgtttaggaactagatgcca 110
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 879 agctatgtgttaaagacatttcaggcttattaaaaagagatgtttaggaactaaatgcca 820
Query: 111 tttaacctaaaaactcaaaacatgatcttcgtcatttccccttctcttccactcta-ata 169
||||||||||||||||||||||||||||| |||||||||||||||||| || || | ||
Sbjct: 819 tttaacctaaaaactcaaaacatgatctttgtcatttccccttctcttacattc-acatg 761
Query: 170 tgcataacacacacacatactcacacaccacacaaaacacacatacacacacacagacac 229
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 760 tgcacaacacacacacatactcacacaccacacaaaacacacagacacacacacagacac 701
Query: 230 acacacacgcacacact--------tcctttttctgtctttctttctcttttattccttt 281
|||||||| | ||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 700 acacacac--atacactctctctcttcctttttctgtctttctttctcttttattctttt 643
Query: 282 tctttaaaaaagacaggttccagctctg-tagtcactagggtctcctcaatgtgaaggtt 340
| ||||||| ||||||||||||||||| || |||||||| | ||||||||||||| ||
Sbjct: 642 tttttaaaa--gacaggttccagctctgata-tcactaggctatcctcaatgtgaaagtc 586
Query: 341 tcttgctcccgagtgtgagccttgtttgcatagacacctaagctaggcatagtattacat 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tcttgctcccgagtgtgagccttgtttgcatagacacctaagctaggcatagtattacat 526
Query: 401 ttaatggaaaaaatgtgcaaataacatagtctctttgaagactagaacagcgaccaagta 460
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ttaatggaaaaa-tgtgaaaataacatagtctctttgaagactagaacagcgaccaagta 467
Query: 461 aaccattatgggattgattca 481
||||||||||||||| |||||
Sbjct: 466 aaccattatgggattaattca 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 879
Length adjustment: 10
Effective length of query: 472
Effective length of database: 869
Effective search space: 410168
Effective search space used: 410168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no391_n16.g1 MSMg01no391_n16.g1 CHROMAT_FILE:
MSMg01no391_n16.g1 PHD_FILE: MSMg01no391_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:12 2005
(562 letters)
>mm_chr1_32332950_32333911
Length = 962
Score = 1056 bits (546), Expect = 0.0
Identities = 558/562 (99%)
Strand = Plus / Plus
Query: 1 ctaggtagaagagaagtttaggaagagaacagagcttcaaggtgagcctgctgtagggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaggtagaagagaagtttaggaagagaacagagcttcaaggtgagcctgctgtagggag 260
Query: 61 atgcaggtatatactaagacacctctgcataacagctctttaaggcctaacagaaatttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcaggtatatactaagacacctctgcataacagctctttaaggcctaacagaaatttc 320
Query: 121 tgttgtttttatctttactttttcttttctcatcttggtcttatttctatgactatgatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttgtttttatctttactttttcttttctcatcttggtcttatttctatgactatgatg 380
Query: 181 gaacctgtgcatgcttcgatgatgctgtcacataatacctactgttttaagccattgtgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gaacctgtgcatgcttcgatgatgctgtcacataatacctactgttttaaggcattgtgc 440
Query: 241 ttgtcttcaagactcataaacttcttgaccttaaaatggattcattttttaatattagat 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtctccaagactcataaacttcttgaccttaaaatggattcattttttaatattagat 500
Query: 301 attttcttcatttacatttcaaatgctatcccctttcctagtttcctcaccaaaaatccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attttcttcatttacatttcaaatgctatcccctttcctagtttcctcaccaaaaatccc 560
Query: 361 catcccctctccccactctgctccccaacccacccactcctacttcctggccctggcatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catcccctctccccactctgctccccaacccacccactcctacttcctggccctggcatt 620
Query: 421 cctctatactggggcatagaatctttgcaggaccaccaaagaattagcatgtagcatagt 480
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 cctctatactggggcatagaatctttgcaggaccaccaaagtcttagcatgtagcatagt 680
Query: 481 tccacacaaagaagcattagtgaacaaataaacaattggtagttagtgtttgagtaataa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccacacaaagaagcattagtgaacaaataaacaattggtagttagtgtttgagtaataa 740
Query: 541 gtcttgttccctttattgataa 562
||||||||||||||||||||||
Sbjct: 741 gtcttgttccctttattgataa 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
