BAC Information

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BAC

Clone NameMSMg01-392A10
Chromosome1 (Build37)
Map Location 188,447,224 - 188,447,588
singlet/doubletsinglet
Overlap geneTgfb2
Upstream geneLOC677785, Lyplal1
Downstream geneRrp15, LOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392A10.T7 (MSMg01no392_a10.b1)MSMg01-392A10.TJ (MSMg01no392_a10.g1)
ACCAG493659AG493660
length772796
length of high quality
(start - end)
447 (70 - 516)337 (74 - 410)
definitionCHROMAT_FILE: MSMg01no392_a10.b1 PHD_FILE: MSMg01no392_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:25 2005CHROMAT_FILE: MSMg01no392_a10.g1 PHD_FILE: MSMg01no392_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGAT
CCGCGGAATTCAACTCTTAGCAACTTGGAAAGAGTCTCAGTTTTCTAGAT
CACCTTCCAGGAAAAAGGCAAATATTGTGCTGAGTAAAAAGGCAAATATT
GTGCTTCTGAGGGGTAAACACTGGTTTAAGATTTCAACACTACAGAGTGC
AGAGAACACATGCCAGCAGCGTACTTAGCCAGTAACGGAACATCTATATC
AAGCCCTTTCTCCAAAAAGCACAGGGACTGTCTTAGTTAGGGTTTTACTG
CTGTGATCAGACACCATGACTAAGGCTACTCTTATAAGGACACCATTTAA
ATGGGGCTGGCTTACAGGTTCAGAGATTCAGTCCATTATCATCAAGGCAG
GAGCATGGCAGCATCCAGGCACGCATGGTGCAGGAGGAGCTGAGAGGTCT
ACATCTTCATCTGAAGGCAAAAAGGAGAAGACTGACTTCCAAGCAGCTAG
GGTGAGGGTCTTATTGCCCACACACACAGTGACACCCCTACTCCAACAAG
CCTACACCTTCTAATAGTGCTACTGTCTTGGCCCAGCCCCGACATTACCA
AACATCCTAGGGACTAATGAGAAAGATGACCCGGGAAGAGGGTAAGAGTC
CGGGGCCCTGAGAACTTGGGAGAAACCGGGGGTCCCGAAAAACTGGAAGC
ACAAAATGGCCCCCCTGACAAAAAAGGAACCTCCATACTCCTGAGCCCCA
CGACGCCCGGGGTGGCCCGGAA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGGACAGCTCCTCAGATAAGTGTACA
ATTTCAAAGAAATTCTCCTTGCATTCACACCTCAGTGGGCGGCCCTTCGG
GTGAGACCACAAATAGTCCATCATTTCATGGACTGGTTTATATCTTGAAG
CTCTGTGACGAGGATACCCACCCTGCAAAGCTCGCCAACCATCTCAAGCC
AAATGAAAGCCAGAGCCTCGGCTGAAGAGCATGACTGCTGAGTGTGTGTG
TAAGGATATTTTGACAAGGTTTTTTTTGGTTTGTGCTTTTTTTTTTTTTT
AATCAGCCTGCAAAGAATGTCTTTCAAAACCTGAACTTCATTGAAATCAG
GGAAATAATGGATGAAATCATGAATAAAATGACGAGTGCTGGCCTGGACT
TTTTCCCCCTTTGACAAACTCAATCAAACTGTGTGTCTTTTCATACTCCC
CCTGTACCCCCTTACACCTATTTACCGAAAAAGGGGTTTCCCTTTGACCT
GCCGGCCTTTTGAAAGGTACCCCACAGCCTTATCTACTTTTACGTTCTAC
ACACCTTTCCCTCACCCCCCCCCTTAACAATTTCGCTTTGTAATTTCTTT
TCCTCCCCCCTCCTTTTCTTTTCCCCGTGCTCCCCTCCCCGTTCTTTCCC
CTATTACACTCTCTTCTTTTCCCCCCCCTCTGTTTTCTTCCCTCTCTTAC
CTCCCCTTTCTTACTATAACTAACGCATATCCCTACCTTCCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_a10.g1 MSMg01no392_a10.g1 CHROMAT_FILE:
MSMg01no392_a10.g1 PHD_FILE: MSMg01no392_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:25 2005
         (337 letters)



>mm_chr1_188447050_188447788
          Length = 739

 Score =  528 bits (273), Expect = e-154
 Identities = 329/369 (89%), Gaps = 36/369 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggacagctcctcagataagtgtacaatttcaaagaaattctccttgcattcacacctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 aaggacagctcctcagataagtgtacaatttcaaagaaattctccttgcattcacacctc 234

                                                                       
Query: 61  agtgggcggcccttcgggtgagaccacaaatagtccatcatttcatggactggtttatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 agtgggcggcccttcgggtgagaccacaaatagtccatcatttcatggactggtttatat 294

                                                                       
Query: 121 cttgaagctctgtgacgaggatacccaccctgcaaagctcgccaaccatctcaagccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 cttgaagctctgtgacgaggatacccaccctgcaaagctcgccaaccatctcaagccaaa 354

                                                                       
Query: 181 tgaaagccagagcctcggctgaagagcatgactgctgagtgtgtgtgt------------ 228
           ||||||||||||||||||||||||||||||||||||| ||||||||||            
Sbjct: 355 tgaaagccagagcctcggctgaagagcatgactgctgggtgtgtgtgtgtgtgtgtgtgt 414

                                                                       
Query: 229 --------------aaggatattttgacaagg----ttttttttggtttgtgcttttttt 270
                         ||||||||||||||||||    ||||    ||||||||||||||||
Sbjct: 415 gtgtgtgtgtgtgtaaggatattttgacaagggcaatttt----ggtttgtgcttttttt 470

                                                                       
Query: 271 ttttttt--aatcagcctgcaaagaatgtctttcaaaacctgaacttcattgaaatcagg 328
           |||||||  ||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct: 471 tttttttttaatcagcctgcaaagaatgtctttcaaaacctgtatttcaatgaaatcagg 530

                    
Query: 329 gaaataatg 337
           |||||||||
Sbjct: 531 gaaataatg 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 739
Length adjustment: 9
Effective length of query: 328
Effective length of database: 730
Effective search space:   239440
Effective search space used:   239440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)