BAC Information

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BAC

Clone NameMSMg01-392A17
Chromosome1 (Build37)
Map Location 102,474,850 - 102,475,191
singlet/doubletsinglet
Overlap genenone
Upstream geneC230078M14Rik, LOC633295, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392A17.T7 (MSMg01no392_a17.b1)MSMg01-392A17.TJ (MSMg01no392_a17.g1)
ACCAG493673AG493674
length757772
length of high quality
(start - end)
405 (47 - 451)414 (75 - 488)
definitionCHROMAT_FILE: MSMg01no392_a17.b1 PHD_FILE: MSMg01no392_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:27 2005CHROMAT_FILE: MSMg01no392_a17.g1 PHD_FILE: MSMg01no392_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAAATTTCTTTCTGGAGGCACTTATTACTGTGAAGTTTCCTGT
TAGCACTGCTTCCATCATTTCCCATTATTTTAGGTACATTGTACCTTCAT
TTTCATTGAATTCTAGAAAGTCTCTAAATTCTTTCTTTATTACTTCTCTG
ACACAGTAATCATTGAGTAGAATGTTTTTAAGTTTCAATGAGTTTGTAGG
AATTCTGCTTTTGTTTGTTTGTTTGTTTAATTCCAGCTTTAATCCATGGC
TGTCTGATAAGATACAGGAGTTATTGTATCTTTGGAGGCTTGCTTTTTGA
TGGACTATATGGTCAGTTTTGAAGAAGGTACCATGAAGTGCTGAGAAGAA
AGTATTTGTGTGTGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TCTCTTTCTCCCCTCCCCCCTCCTTTTTTCTTCTTCTTCCCTCTTTCCCT
CCCTCTCTCCTTCTCTCCTCTCTCTCCTTTCCTTCCCCCCCCCCTCCTTT
TTTCTCCCCCCCCCCTCCCCTCTTCTTCCCTTTCCTCTTTTTTTCCCCCC
CCCCCTCCTTTCTCCTTCCCTCCCTCTTCCCCTCTTTCTTCCTCTTCTTC
TCTTCCCCTTCCTCCCCCTCCCCTCCCCTCCTCCCTTCCTTTTCTCCCCC
CTTCCCTCTCCTCTCTCCCCCTCCCCTCCCCCTTTTTTCCCTTCCCCTCC
CCCTCCT
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGGGTGGATTACACACGCGCGCGTG
TGCGCGCACACACACACACACACACACACACACACACACAGAGGAATATG
TCTAGGAAGAGGGGAAAGTTGATTTCTGAGTAGAGCGAAGCAAGTCAAGT
GGTTTAAGAGAGGAAAGCTAGAACAAAGGAACACAGCTGCCCCAGCAGGC
ATTTAGCCGCTATGATGAAACTATGAGAAAACAAAACAAAACAAAACAAA
ACAAAACAAAACAAAACAAAACTTTTTAAAACAAAACAAAACAAGCTGCT
TGTTTCCAGCCAACAAATATCAAAGTATATGTTTTAACATTTTGATTTAA
CTGTTTTTAGGATGCAAGAAAATACACAGATTTTGCTGAAGGCACGTGAG
GATTTTGGTTTAAAACTAATACCAAGATTTTGGGCTCAGAGGAGCTGGGA
GCCCTTGCTGTGCAGAGACAGGCTGCTTGCTCCGAGGAAGACAGAGAGAG
GTATACTGCCCAGGTTTGTGCCTACCCCCACCAAATAATCCAAGGGTTCT
GCCCCACACACTCTGGCGTAATTGGTCTTTATGGCCCAATGGCCCCCATG
GTGCTTGTTTCCTTTTCCCNCACCTCCCTCTCCTTCTCCCCCCCCCTCTG
GCTCCTTCTCCCCTCTTCTTCTCACCCGTCTTTTTTTCCTTCCCTCTCTC
CTTCCCTTCCTTTTTCTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_a17.g1 MSMg01no392_a17.g1 CHROMAT_FILE:
MSMg01no392_a17.g1 PHD_FILE: MSMg01no392_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:27 2005
         (414 letters)



>mm_chr1_102474380_102475193
          Length = 814

 Score =  557 bits (288), Expect = e-163
 Identities = 339/382 (88%), Gaps = 40/382 (10%)
 Strand = Plus / Minus

                                                                       
Query: 33  cacacacacacacacacacacacacacacacacagaggaatatgtctaggaagaggggaa 92
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 cacacacacacacacacacacacacacacacacagaggaatatgtctaggaagaggggaa 753

                                                                       
Query: 93  agttgatttctgagtagagcgaagcaagtcaagtggtttaagagaggaaagctagaacaa 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 agttgatttctgagtagagcgaagcaagtcaagtggtttaagagaggaaagctagaacaa 693

                                                                       
Query: 153 aggaacacagctgccccagcaggcatttagccgctatgatgaaactatgagaaaacaaaa 212
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 692 aggaacacagctgccccagcaggcatttagccgctatggtgaaactatgagaaaacaaaa 633

                                                                       
Query: 213 caaaacaaaacaaaacaaaacaaaacaaaacaaaactttttaaaacaaaacaaaacaagc 272
           |                                        |||||||||||||||||||
Sbjct: 632 c----------------------------------------aaaacaaaacaaaacaagc 613

                                                                       
Query: 273 tgcttgtttccagccaacaaatatcaaagtatatgttttaacattttgatttaactgttt 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tgcttgtttccagccaacaaatatcaaagtatatgttttaacattttgatttaactgttt 553

                                                                       
Query: 333 ttaggatgcaagaaaatacacagattttgctgaaggcacgtgaggattttggtttaaaac 392
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttaggatgcaagagaatacacagattttgctgaaggcacgtgaggattttggtttaaaac 493

                                 
Query: 393 taataccaagattttgggctca 414
           |||||| |||||||||||||||
Sbjct: 492 taatacaaagattttgggctca 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)