BAC Information

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BAC

Clone NameMSMg01-392B22
Chromosome1 (Build37)
Map Location 145,522,659 - 145,523,132
singlet/doubletsinglet
Overlap geneCdc73
Upstream geneLOC545369, B3galt2
Downstream geneLOC623138, Glrx2, Trove2, Uchl5, Rgs2, Rgs13, Rbm6-ps2, Rgs1, EG639456, Rgs21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392B22.T7 (MSMg01no392_b22.b1)MSMg01-392B22.TJ (MSMg01no392_b22.g1)
ACCAG493731AG493732
length771783
length of high quality
(start - end)
474 (76 - 549)336 (75 - 410)
definitionCHROMAT_FILE: MSMg01no392_b22.b1 PHD_FILE: MSMg01no392_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:33 2005CHROMAT_FILE: MSMg01no392_b22.g1 PHD_FILE: MSMg01no392_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGAATATTTCCCTCTGATACTAGGTAATAATGAAGGTAAGTCT
CAAGTCTACATTAGGCCAGAGCTGCCAGGCCTAACAAGCTGAGCTCAATC
CCAGGAATGCACATGGGGAAAGGAAAGAAGTGACTCTCCAAGCTGTCTTC
TGACCTCCAAGTGTACACATGCACACACATGAATCCCATACTCCACGTTC
CATACTCCTTTTAAGTATCTATAGATATGTTTAGAGTTTAGCAGATGAAA
ACTATATATACCTAGAGATAAGCAGTCAAAATGTTTAATTTTGACCTTTA
AAAATGTTAACTTTATTTTTAAATGCTAATATTTATAATAGGAAAACTCA
CTTCTAAACAATAGTTAAATGACTGTTTTTTATACGATACAGTGGTACCA
ACATTACATTATAACACTTAAACTGGTACAATCCTGCCACCTAGAGTTGA
CAGGAAAAAAGCTCCTATCAGCAATTTAAAATTTTAATATTTTAGATTTT
TAAAACCCTGTAAGTTTCAGACTAAGTTAACATGAATTTTAAAAAAAAAC
AAAAAAAGCCAAGCATAATGACCCGTGCCTTCCATCCCGGCACTCTAGAG
GCAGAAGAAGCGGCCCACGCTGAGCCTGAAGCACGTGGATTTTCCCTGAA
AAGGAGGCCCCCCCAATCTAACCGCCAGTTACAGGGACCCCCCGACTATA
ACGTAAACCCCGGCCCCAACA
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGACGAAATTCAAGACAGTCTATCA
GAGGTAAAGCGGGGAGAGAGAGTAGGAGCAAAGAGGAAACATGGTGCACC
AATTAAGCATACAGGCCTTTCCACGGGTCTTGAACCCGAGGAAAAGTTAA
TGTCAGGTAAGAATACCTGGGGAGAGATTGGAAGGAAGGAGAAGGAAAAA
GAAAAGAAAAAAGATCAATCAGCGGAGGTTTCTAGGAGAAGGAACTTATA
CCCGCCACTAGATGAGTTTAAGCGGTTAGTTCTTAGTAGCTCAGAATCAG
ATGAAGGACTTAGCTCCTCTGAAGAAATGGACTTGGAGGAGGTAGCAGTT
CGTTATAAGGGAGAAAGGTACCAGCAAGATAAAAAGTGAGCTACTCAGTC
CAGAATAAGGTATAAAGTGGCTGCCGAATGCCCGCTTGCTGTTAGGCCTC
CGGACTGCCGGCTTCAGGGGCCCCAAGGTACCATTCAAAGTCTTATGCGC
TGCAGGTACTATTCTAATACCTTATGCGCCCGAGTTTTCTTTCCCATCAT
TTTTCTCTCTACTCTATCTTTTCCCACTCGCCCCACGTGTTTTCCCCTTC
TTTTAACCATCTGATCCTATGCTTCCTTCTTCCCTCTCTTCCCTATATCC
TTTCTCTTTTATCCCCTCTCCTAACCCCCTTTCTCTCTCCCCTTTCTACT
CCCTTTTCTCCCTCCCCTTTTCCCCCATTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_b22.b1 MSMg01no392_b22.b1 CHROMAT_FILE:
MSMg01no392_b22.b1 PHD_FILE: MSMg01no392_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:33 2005
         (474 letters)



>mm_chr1_145522459_145523332
          Length = 874

 Score =  917 bits (474), Expect = 0.0
 Identities = 474/474 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaggtaataatgaaggtaagtctcaagtctacattaggccagagctgccaggcctaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaggtaataatgaaggtaagtctcaagtctacattaggccagagctgccaggcctaac 260

                                                                       
Query: 61  aagctgagctcaatcccaggaatgcacatggggaaaggaaagaagtgactctccaagctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagctgagctcaatcccaggaatgcacatggggaaaggaaagaagtgactctccaagctg 320

                                                                       
Query: 121 tcttctgacctccaagtgtacacatgcacacacatgaatcccatactccacgttccatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttctgacctccaagtgtacacatgcacacacatgaatcccatactccacgttccatac 380

                                                                       
Query: 181 tccttttaagtatctatagatatgtttagagtttagcagatgaaaactatatatacctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccttttaagtatctatagatatgtttagagtttagcagatgaaaactatatatacctag 440

                                                                       
Query: 241 agataagcagtcaaaatgtttaattttgacctttaaaaatgttaactttatttttaaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agataagcagtcaaaatgtttaattttgacctttaaaaatgttaactttatttttaaatg 500

                                                                       
Query: 301 ctaatatttataataggaaaactcacttctaaacaatagttaaatgactgttttttatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaatatttataataggaaaactcacttctaaacaatagttaaatgactgttttttatac 560

                                                                       
Query: 361 gatacagtggtaccaacattacattataacacttaaactggtacaatcctgccacctaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatacagtggtaccaacattacattataacacttaaactggtacaatcctgccacctaga 620

                                                                 
Query: 421 gttgacaggaaaaaagctcctatcagcaatttaaaattttaatattttagattt 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttgacaggaaaaaagctcctatcagcaatttaaaattttaatattttagattt 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)