BAC Information

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BAC

Clone NameMSMg01-392D22
Chromosome1 (Build37)
Map Location 69,188,595 - 69,360,899
singlet/doubletdoublet
Overlap genenone
Upstream geneErbb4, LOC667842
Downstream geneEG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392D22.T7 (MSMg01no392_d22.b1)MSMg01-392D22.TJ (MSMg01no392_d22.g1)
ACCAG493824AG493825
length761739
length of high quality
(start - end)		474 (77 - 550)377 (79 - 455)
definitionCHROMAT_FILE: MSMg01no392_d22.b1 PHD_FILE: MSMg01no392_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:42 2005CHROMAT_FILE: MSMg01no392_d22.g1 PHD_FILE: MSMg01no392_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,360,426 - 69,360,899)(69,188,595 - 69,188,968)
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTATTTCTGGGCCAGAACTAGGGAGAAAATAAAGTTCT
TAATTTTTCTCCGTTTGTCTGGTAGTTACCAGTATCAACATTTATAAAAA
CAGGGAAACAGGATGTATGCCAATTTAACTGTAAGACAAGTGGCCAGACC
TCAGAAGTGAGGTTTTCGTAGATGACACTTTCACCTCTGCGTATCTCACC
TCATCCTCAGCATAAGATTTCCTGGAGAATTTCTTGGGGTCGATTTCTTG
GGGTCTATGTTTTAAGGGTCTCTGTAACTTTGCTCTGTTCCATAATTATT
TAATTTTGTTCCACAATACCATTCTCTACAATTTCAGCCTTCAGGTCTCA
AATCAGGGGTTCCAACCACCTTTACTCCCCCATCGACACTTTTTTCCCCT
GTAGCATTTATCAGCTTTGACCACAATTGCCTATTGATTTTGTTTGCAAT
TTATTCATTATCCTTTCTACTAAACCTAAACCCCAGATGAGCAGCGGTTT
ATCCCAGTTTCACTTACTGATGCATCCTGAGTAAGTAGCATTCTGCCTGG
ATTGTAAGAGGTGATTGGGAAACTATTGATAACTAGATGAATATCATAGT
CCCCACTAATATGGATTAGATACAGGAAACAGTGGGTTACACGAAGAAGG
CGTATCTGAAAGTTGAGCGCCCCCAACCTTACCCCCCTCTTAATATGGCC
TTAACTGGACC

TTTTTCGATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTGTTAAATTCTACCCACAT
CTTCCTCTGATGCTATGTTCCTCTCCCTCATTTTCCTTTTCCTCCTACTT
CTGATGATACAGTCAAGGAGTTAATGGGAGGCTATATTGCCCTAAGATAA
TTGCAACTTGATACTTGAGAGTGTGATTTTTTTTTTAACTCTTGGCTTTA
ACTTGTGTGACCTCCTGGAGATGTCCAATAGTGAGCAGGTGGTGTTGAGT
TCTTCTAGTCACACCTGTTCATTCTTAATTAATTACTTGTAAGACTAGAC
AATTAATTAACTGCAAGACTAGGTTTTACATATCTAACAAATTCACTATT
TCACACTACCACATTAGTAAAATTTGTGTGTGTGTGTGTGTGTGTGTGTG
TGCGTCCCCCTCCCTCTCTTTTTCCACTCCCCCCCCCCCTTCCTTTCTCC
CTCTTTCTGCACTCTCTTTNTCTCCTTCCCTCTTTTTCCTTTCTCCTCCC
CCCTTTCTTTACTTCTCCTTTTCCCTTCATTCTCTCCTTTTCCCTCCCCC
TTTTTTTTTTTCCTGTCCTATTCATTCCTCCGAACCGCCTTCTTCCTCTT
TTCCCCTCCCCCTCCTCTTTTTACCTGCTCTTTCCCATTTATTTCTCCCA
TTTTTCCTCCTTTTTTCCCTCCCCTTTCTCCCACTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_d22.b1 MSMg01no392_d22.b1 CHROMAT_FILE:
MSMg01no392_d22.b1 PHD_FILE: MSMg01no392_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:42 2005
         (474 letters)



>mm_chr1_69360226_69361099
          Length = 874

 Score =  917 bits (474), Expect = 0.0
 Identities = 474/474 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaactagggagaaaataaagttcttaatttttctccgtttgtctggtagttaccagtatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gaactagggagaaaataaagttcttaatttttctccgtttgtctggtagttaccagtatc 615

                                                                       
Query: 61  aacatttataaaaacagggaaacaggatgtatgccaatttaactgtaagacaagtggcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aacatttataaaaacagggaaacaggatgtatgccaatttaactgtaagacaagtggcca 555

                                                                       
Query: 121 gacctcagaagtgaggttttcgtagatgacactttcacctctgcgtatctcacctcatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gacctcagaagtgaggttttcgtagatgacactttcacctctgcgtatctcacctcatcc 495

                                                                       
Query: 181 tcagcataagatttcctggagaatttcttggggtcgatttcttggggtctatgttttaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tcagcataagatttcctggagaatttcttggggtcgatttcttggggtctatgttttaag 435

                                                                       
Query: 241 ggtctctgtaactttgctctgttccataattatttaattttgttccacaataccattctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggtctctgtaactttgctctgttccataattatttaattttgttccacaataccattctc 375

                                                                       
Query: 301 tacaatttcagccttcaggtctcaaatcaggggttccaaccacctttactcccccatcga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tacaatttcagccttcaggtctcaaatcaggggttccaaccacctttactcccccatcga 315

                                                                       
Query: 361 cacttttttcccctgtagcatttatcagctttgaccacaattgcctattgattttgtttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cacttttttcccctgtagcatttatcagctttgaccacaattgcctattgattttgtttg 255

                                                                 
Query: 421 caatttattcattatcctttctactaaacctaaaccccagatgagcagcggttt 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 caatttattcattatcctttctactaaacctaaaccccagatgagcagcggttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no392_d22.g1 MSMg01no392_d22.g1 CHROMAT_FILE:
MSMg01no392_d22.g1 PHD_FILE: MSMg01no392_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:42 2005
         (377 letters)



>mm_chr1_69188395_69189171
          Length = 777

 Score =  723 bits (374), Expect = 0.0
 Identities = 374/374 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtgttaaattctacccacatcttcctctgatgctatgttcctctccctcattttcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtgttaaattctacccacatcttcctctgatgctatgttcctctccctcattttcctt 260

                                                                       
Query: 61  ttcctcctacttctgatgatacagtcaaggagttaatgggaggctatattgccctaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcctcctacttctgatgatacagtcaaggagttaatgggaggctatattgccctaagat 320

                                                                       
Query: 121 aattgcaacttgatacttgagagtgtgattttttttttaactcttggctttaacttgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattgcaacttgatacttgagagtgtgattttttttttaactcttggctttaacttgtgt 380

                                                                       
Query: 181 gacctcctggagatgtccaatagtgagcaggtggtgttgagttcttctagtcacacctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacctcctggagatgtccaatagtgagcaggtggtgttgagttcttctagtcacacctgt 440

                                                                       
Query: 241 tcattcttaattaattacttgtaagactagacaattaattaactgcaagactaggtttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcattcttaattaattacttgtaagactagacaattaattaactgcaagactaggtttta 500

                                                                       
Query: 301 catatctaacaaattcactatttcacactaccacattagtaaaatttgtgtgtgtgtgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catatctaacaaattcactatttcacactaccacattagtaaaatttgtgtgtgtgtgtg 560

                         
Query: 361 tgtgtgtgtgtgtg 374
           ||||||||||||||
Sbjct: 561 tgtgtgtgtgtgtg 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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