BAC Information

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BAC

Clone NameMSMg01-392H23
Chromosome1 (Build37)
Map Location 61,072,133 - 61,072,530
singlet/doubletsinglet
Overlap genenone
Upstream geneIca1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos
Downstream geneLOC433313, LOC100042566, Pard3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392H23.T7 (MSMg01no392_h23.b1)MSMg01-392H23.TJ (MSMg01no392_h23.g1)
ACCAG494018AG494019
length794844
length of high quality
(start - end)
401 (48 - 448)119 (76 - 194)
definitionCHROMAT_FILE: MSMg01no392_h23.b1 PHD_FILE: MSMg01no392_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:02 2005CHROMAT_FILE: MSMg01no392_h23.g1 PHD_FILE: MSMg01no392_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTAAAATTTGTAAATTTCCACAAGGCAAAAGGGATGGAGGTTC
TGCAAACTTGAGCTCAGGCGGCATAATGTAGGATACTCAGTCTAGGTAGC
TTCGCTCTTTACCACGCATTAGTGTCCTGAGAATTTCTCTGAGGGGGCAG
CTTGAGCGCTAGTGAAGCCAGGGTTCTTAAAAATCTGCTTTGACACTCCT
TGGTTCTAAGATGGCTTCCTTTCTTTCTGAGAATTTTCATGTTGCTGATT
CTCCTAGACTTTTCCTCACCCCCACCCCCTGCTCCAATCCTTTCCTGATT
CAAAGAAACAAAGATCTCTGCAAGCAAGAGGAGCTGATAGTGACAGAAAG
CTTGTCTCTACCACTGATATGGGCTTAAGAGTATTTAGGTTATAAACAAT
AGTTTCCTGTCAAATAATTCTGAGACCACCTCTAAAATGGTTGTAGGGGA
GGGAGACAGGTTTTGCCCCTGAGAAGAAATGGAACCATTTAGGCTTTTTC
ACCCTCCTAAAGCATTCCAAGACCAGGGCTTCCCGGGGATTTCCACGAGC
CCCCCCCACCTGGAGTTTCCCCCTTTCCAAATTTAATTTGTTTTCCCCCG
CCGGGGAATCGGGCGGGGGGACCGTCTCCCCCCTTCCCCCCCTTTTCTTT
CTCTCCTCCCCTCCTTTTGTCTTCCTCCTCTCCTCCCTCTCTTCCCTCCC
CTCTTCTCCTCTTTCACCTTACCATATTCTTCCCCCCTTGCTCC
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTACCTCCTGCTTCAACCTACCAA
GTAGCTGGGATTAAATCCTTGGGTCCACCACTGCCTGACTTATTATATTT
TGCCTTTTTCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCC
CCTCCCCCCTTCTCCCCCCCTTCTCCCCCTTTCCCTCTTCCTCCCCCCCT
TTTTCTTTTTTCCCCCCTCCCCCCTCCCCCCCTTTTTCCCTTCCTTTCCC
CTTTCCNTCCCCCCCCCCTTTTTTTCTTNCCCNCCNCCCCCCCTCTTCCC
CCCCCCCTTTTTTTCCTCCCCCTCCATTTCCCCTTCCTCCTCCTCTTCTC
CCTCTTCTCCTTTTCCCTCCCTCCCTCCCCCTTTCCCCCCCTCTCCTCCT
CTTTCTCCTCTTCCCTCTTCCTTCCCCCCCTCTCCCCTTCTTCTTGTTTT
CACCTTTTCCCCCCCCCCTCCCTTTCCCTCCCCTCCCTCTCTTTTCCCTC
CCTTTCCTATTTCCTTTTCCCCTTCCCTCCCCTCTACCTCTTTTCCCTCC
TACCCCCCTTCTTCCCTTCTCTCCCTCCCCCTCTTTCCACTTCCTTCCTC
CCTCCTCTTTCCCTCTCCCCCCCCCTTCTTTTATCCCCTCCGTCCCTTCC
TCCTTCCCTCACTCACTTCCCTCCCTCTCTCCCACTCTATCCCCCCTCCC
CCTTGCTCTCTCTTTTACCCTCTCCTATTCGCTCCCTTCTCCCCTCCCCT
CTCCTCCCCGCCTTTTTCTCCCCCCCTTTTCTCCCCACTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_h23.b1 MSMg01no392_h23.b1 CHROMAT_FILE:
MSMg01no392_h23.b1 PHD_FILE: MSMg01no392_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:02 2005
         (401 letters)



>mm_chr1_61071930_61072730
          Length = 801

 Score =  746 bits (386), Expect = 0.0
 Identities = 395/398 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctaaaatttgtaaatttccacaaggcaaaagggatggaggttctgcaaacttg 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctaaaaattgtaaatttccacaaggcaaaagggatggaggttctgcaaacttg 263

                                                                       
Query: 64  agctcaggcggcataatgtaggatactcagtctaggtagcttcgctctttaccacgcatt 123
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 264 agctcaggcggcataatgtaggacactcagtctaggtagcttcgctctttaccacgcatt 323

                                                                       
Query: 124 agtgtcctgagaatttctctgagggggcagcttgagcgctagtgaagccagggttcttaa 183
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtgtcctgagaattcctctgagggggcagcttgagcgctagtgaagccagggttcttaa 383

                                                                       
Query: 184 aaatctgctttgacactccttggttctaagatggcttcctttctttctgagaattttcat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaatctgctttgacactccttggttctaagatggcttcctttctttctgagaattttcat 443

                                                                       
Query: 244 gttgctgattctcctagacttttcctcacccccaccccctgctccaatcctttcctgatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gttgctgattctcctagacttttcctcacccccaccccctgctccaatcctttcctgatt 503

                                                                       
Query: 304 caaagaaacaaagatctctgcaagcaagaggagctgatagtgacagaaagcttgtctcta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caaagaaacaaagatctctgcaagcaagaggagctgatagtgacagaaagcttgtctcta 563

                                                 
Query: 364 ccactgatatgggcttaagagtatttaggttataaaca 401
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccactgatatgggcttaagagtatttaggttataaaca 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)