BAC Information

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BAC

Clone NameMSMg01-392I11
Chromosome1 (Build37)
Map Location 188,668,925 - 188,862,795
singlet/doubletdoublet
Overlap geneLOC666832, LOC100042375, D1Pas1
Upstream geneLOC677785, Lyplal1, Tgfb2, Rrp15
Downstream geneSpata17, Gpatch2, Esrrg, 9330162B11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392I11.T7 (MSMg01no392_i11.b1)MSMg01-392I11.TJ (MSMg01no392_i11.g1)
ACCAG494042AG494043
length734769
length of high quality
(start - end)
231 (88 - 318)132 (178 - 309)
definitionCHROMAT_FILE: MSMg01no392_i11.b1 PHD_FILE: MSMg01no392_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:05 2005CHROMAT_FILE: MSMg01no392_i11.g1 PHD_FILE: MSMg01no392_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(188,668,925 - 188,669,151)(188,862,666 - 188,862,795)
sequence
GGGGGGCAATTATAATTTGCGGCCGCNAAACGACCCACATCAAACCCCCT
GCCGCGGAANCCAGATCCCAACACCTCCTTTCTTTNNAAAAAAAATCTTT
ATCCTTTGTCTACTTGTAAGTGGTCTTAAAGTAACCCTGCTTAATAAAAC
CAGATTTTAGCATGCTTACCTTTGGTAATATTTCTCCTAGGAGGGCATTT
GGCCAGCGACATAGAAGAAGAACATGTGTTGTTCTCAGAGAGGATGTATG
GTATTTTATTAATATCCTGGCTACCGTGAGTCCCACAGTCCCCTCTGGTA
CATCGTTTCATACATCTGGGCTGANTAAAAATATATAGGCTTGGAAACTC
TTCCTCTGACTGTTGACTTATAGCCTTCCCAGGTATATCTATAGTTTAAA
AAAATCTCTGTTGTGCCCCCACTGTGTGCAAGGGACACCCTTTAGCTCCT
CTAAGGACCATCCCACCCACGACTGTGGTTACACTGCTGGGTGGACAAGC
TCCCAATCTGAGTCATGCAGTGGAGACTTAATTTGGTTAAAACCGAGATG
ACTTATAGTCTGGACAGGATATTCATGGCAGCCTTGTAATGGGCCACGCT
GGCTCTTACAGCCCGTACGCTAAGCTCGAAGGAAGCCCCCGCTTCTGTTA
TTTTTTGTAAATGGACTCGCGTTCCGCCTACAAACCGGTCTCAATACCTC
CGTAAAACACATTCCAACCTAACCCCCCCCTCAG
ATGAACCCGGGAGGCCTGGNGGNCGNCCGGCCTTAGNTCATGCCGNGAAN
NANAGAAGGATTGAAGCATTGACCGCGANNNNGANNAANGNNCCCAAAAC
CATGGGAANTNAGGGATATCATTCCCATATTCAAGAATTAAATTCAGACA
GAACAATGGTTTATTTGAGAGCTAGCTCTAACCTGAGGTTTCAGCTCTGC
CTGTTGGTTTCACATCCTTGAGAGCAGTCCTCAGAGGTCCTGCCTATGTT
TTCTTCATCGCTGTTCCCTTGAGGAATGGTGCATTCTTCGGCTATGGTGG
ATGTGATAACAGCCTTTTCTCTTGTCGCACGCCAGGAGCAGAGACGCCCC
CCGGAATGTTTTTTACCAGCGACACTTGCTCACTCTTCTGTCTTCCTTGC
AGCCAACCACCCCCCCCCCCTGAGACTAAGTCCCAGGAAGGGAACCAGCC
CCCACCCGCATTCCCCTTACCATATCTCCCACCCCGCCTATCTTCACATG
CGCAATTGTGCCCCCCCATATCCCCCTATATCCCATCCCCCCACCTCTAT
ATCCCCCTCCCTATCGCCCCGTGTTCACCCCCCCCCCTCCCCCCCCCCCC
CCTTCCCCCTTTTCCCTGTCCTATCGCCTTTCCTCCCCCCCCCCTTCTTC
CCCCCCACCCCCCCCTTTTTTCTTCCTCCAAACCCCCCCCCCTGCTCCCC
CCCACGTCTCTCTTCCCTCTCCTTCCCCTCGCCCCTGCCTTATCCCCCCC
TTCCCTACCCTCCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_i11.b1 MSMg01no392_i11.b1 CHROMAT_FILE:
MSMg01no392_i11.b1 PHD_FILE: MSMg01no392_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:05 2005
         (231 letters)



>mm_chr1_188668721_188669351
          Length = 631

 Score =  416 bits (215), Expect = e-121
 Identities = 224/227 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   aaaatctttatcctttgtctacttgtaagtggtcttaaagtaaccctgcttaataaaacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aaaatctttatcctttgtctacttgtaagtggtcttaaagtaaccctgcttaataaaacc 264

                                                                       
Query: 65  agattttagcatgcttacctttggtaatatttctcctaggagggcatttggccagcgaca 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 agattttagcatgcttacctttgttaatatttctcctaggagggcatttggccagcgaca 324

                                                                       
Query: 125 tagaagaagaacatgtgttgttctcagagaggatgtatggtattttattaatatcctggc 184
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 325 tagaagaagaacatgtgttgttctcagagaggatgtatggtagcttattaatatcctggc 384

                                                          
Query: 185 taccgtgagtcccacagtcccctctggtacatcgtttcatacatctg 231
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taccgtgagtcccacagtcccctctggtacatcgtttcatacatctg 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no392_i11.g1 MSMg01no392_i11.g1 CHROMAT_FILE:
MSMg01no392_i11.g1 PHD_FILE: MSMg01no392_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:05 2005
         (132 letters)



>mm_chr1_188862466_188862997
          Length = 532

 Score =  205 bits (106), Expect = 8e-58
 Identities = 124/130 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaacctgaggtttcagctctgcctgttggtttcacatccttgagagcagtcctcagagg 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctaacctgaagtttcagctctgcctgttggtttcacatccttgagagcagtcctcagagg 271

                                                                       
Query: 61  tcctgcctatgttttcttcatcgctgttcccttgaggaatggtgcattcttcggctatgg 120
           ||||||||||||  ||  ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 270 tcctgcctatgtcctcagcatcgctgttcccttgaggaatggtccattcttcggctatgg 211

                     
Query: 121 tggatgtgat 130
           ||||||||||
Sbjct: 210 tggatgtgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 532
Length adjustment: 8
Effective length of query: 124
Effective length of database: 524
Effective search space:    64976
Effective search space used:    64976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)