BAC Information

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BAC

Clone NameMSMg01-392P13
Chromosome1 (Build37)
Map Location 167,537,269 - 167,537,531
singlet/doubletsinglet
Overlap geneMpzl1
Upstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625
Downstream geneRcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392P13.T7 (MSMg01no392_p13.b1)MSMg01-392P13.TJ (MSMg01no392_p13.g1)
ACCAG494381AG494382
length798786
length of high quality
(start - end)
90 (81 - 170)245 (72 - 316)
definitionCHROMAT_FILE: MSMg01no392_p13.b1 PHD_FILE: MSMg01no392_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:41 2005CHROMAT_FILE: MSMg01no392_p13.g1 PHD_FILE: MSMg01no392_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGCACCCCACCG
CGGAATTCTGGGCTACCCCCCCCGCACGGCAAAATAGAAAAGACCTAAGA
ATAGGCACATACAGTATTTTAGTTCACTTCATTTGTTTTGGATTGTTTTG
GTGTGATGTTGAGTTTTGTGGTTAGGGGAGGCCTCTCGGAGAGTGTGGGC
CTGTGCACCCCACCCCTCCCCCGCACACCCCCGCTCCGGTCCGCCGCGAT
TTTTTTTTCCCAGGGACGCACGCCGCCACAGCGCGGACACCCCCTCCCTC
TCCCCCCGACGGGACCACTCTCCCTCCATTCCCCGCCNCCCCCGAAACCC
CCGCCCCCCGCCTTCTCCCCCCCCCCCTCCCCACGGGCCCGCCACCCCCC
TTCGTTATTTTGTGTCCCCACACCCCCCCCCAATGATGGAATGATAATAA
TTACCCCCCCCACCCCCCCCCCCCCCCACATCCCCCCCCCCCCCTCACCT
CCCCCCCCCCCCCTTCCCCCCCCCCCCTCTTCTCACCCCCCCCCCACCCC
CCCCCCCCCTCCCCCCCCCCCCCCCTTATTCACTACCCCCCCTCCCACTC
CCCCCCCCCCCCCTCTCCCCCCCCTCCTACTTCCTCCCCCCCCCCTCCCC
CGTCCTCCCCTCCCACCCCCCCCCCTCCCCCCCCCCCGCCCACTCCCCCC
CCCCTCCCCCCCCTTACCCCCCCCCCCACCCCACCCCTTCCCCCCCCCCC
CCCCCCCTCCTTTCACCCCCTTCCCGCTCTATCTCCCCCCCNCTCCCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGTTACTGTTTTCCTGTTGGTCCATTGT
GTCCTTTGGATAGTGGCACCTGCTTTATCAGTGTTGTACATTTTAGGTTG
TCAGCACCAGATAGGAAAAGAATGCCATCCATCATTAAGTAAGAGGCATG
GTGGTTCACACCTTCAATCCCAGCACTTGGGAGGCAAAAGCAGGGAGATT
TCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGGGTTCCAGAATGGCCAG
GGCTCCCCCCAAAAACCTTTTATGGTGGCTTTCTTTGGTGGATGAGTGTG
CGATTTGAATGTGTTCCCCAAATGCCTGCGCTGTCCCCCAAGCCCGCCTG
CATCCCCTTACTCCCAGCTTGCGCGAATTTGTTTATAATTCCCCTTCATC
CCCTCGTCCGTCTCCACTTCCTTCTTTTCCCTCTTCCACCCTTTCCCCTG
TAACCCCAGCAAAACCCTCCTTTCCCTCCTCCCCCTCTTCCCTCTTTCCC
TCTTTTCCCTCCTCTTCCTCCCCCCCCCCCCTTTCCCCCGCTTTTCTTCT
TTTTCCTCCCTCCCCTTTCTTTTTTCTCTTCTTCTCGCCTTTTCTCCCCC
CCCTTTTCCTTTTCCCCCTATGACTCTTGTTCCCTCCCTTTTCCCCCTCC
CACTTCCTTCTTTTCTTCCCCTCTTCCTTCCTCCCCCCTTTTCTTTCCCC
TCCCCTCTCCCGCTTCCCTTTCCTTTTTTTCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_p13.g1 MSMg01no392_p13.g1 CHROMAT_FILE:
MSMg01no392_p13.g1 PHD_FILE: MSMg01no392_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:42 2005
         (245 letters)



>mm_chr1_167537209_167537853
          Length = 645

 Score =  387 bits (200), Expect = e-112
 Identities = 239/264 (90%), Gaps = 20/264 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggttactgttttcctgttggtccattgtgtcctttggatagtggcacctgctttatcag 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 323 aggttactgttttcctgttggtccattgtgtcctttggatcgtggcacctgctttatcag 264

                                                                       
Query: 61  tgttgtacattttaggttgtcagcaccagataggaaaagaatgccatccatcattaagta 120
           |||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 263 tgttttacgttttaggttgtcagcaccagatagggaaagaatgccatccatcattaagta 204

                                                                       
Query: 121 ag-------------------aggcatggtggttcacaccttcaatcccagcacttggga 161
           ||                   |||||| ||||||||||||||||||||||||||||||||
Sbjct: 203 agagtgtctaactcttgggtcaggcat-gtggttcacaccttcaatcccagcacttggga 145

                                                                       
Query: 162 ggcaaaagcagggagatttctgagtttgaggccagcctggtctacaaagtgggttccaga 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ggcaaaagcagggagatttctgagtttgaggccagcctggtctacaaagtgggttccaga 85

                                   
Query: 222 atggccagggctccccccaaaaac 245
           ||||||||||||| ||||||||||
Sbjct: 84  atggccagggctctccccaaaaac 61


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)