BAC Information

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BAC

Clone NameMSMg01-392P15
Chromosome1 (Build37)
Map Location 31,614,906 - 31,615,238
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262
Downstream geneLOC624275, LOC666056, LOC100041238, Khdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392P15.T7 (MSMg01no392_p15.b1)MSMg01-392P15.TJ (MSMg01no392_p15.g1)
ACCAG494385AG494386
length780770
length of high quality
(start - end)
419 (70 - 488)333 (73 - 405)
definitionCHROMAT_FILE: MSMg01no392_p15.b1 PHD_FILE: MSMg01no392_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:42 2005CHROMAT_FILE: MSMg01no392_p15.g1 PHD_FILE: MSMg01no392_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACCTGACGAATACCGAATGGCAGAGAAGCACCTGAAAAAA
TGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAG
ATTCCACCTCACATCAGCCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCGTGGATGTGGAAAAAGAGGAACACTCCTCCATTGTTGG
TGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT
CAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGG
GCATATATCCAGAAGATGCCCCAACTGGTAATAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATGCCCTTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTANGC
CAATGGATGGACCTGGAGGGCAGCATCCTGAGTGAGGTAACACATTCCCC
AAGGAACTCCCACCATATGTACTCCCTGAAAAGTGGATATTAACCCCAAA
CCCATGATACCCCCGAATAAGAACCATTTTCCTAACCCCTGGAACCCCAC
AAAAATGACCACCGACGGGTGGAACCCATGCCCCCCCCCTAAAATGGGAA
ACAAAACCCCCGTGGGGCCCCCCCTCCCCC
CATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTGTTCTCATTTTCTGTTGGGTATCTT
TCTTCATGAGACAGAGCCTCAGCTTTCCTACTCTCTCCCTTATACCTGCT
CTATTCTTTGTCTTCAGGCTTAAAAGTGGAAACAGTCACCAGGGGCATAT
TACCATCCATTACCAGTGTCATATATTCTGTTTACTCCTCTGTAAGCAAT
ATGTTTTATCTCATCTATTTTAATTAGCTCACTTAAGTCATATAACATTT
GAGTATATTTCTTGACTCATCTCTATGATCCAATGCTTAACGGTACATAT
ACACACCAAGGAGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAACAACAAGAAGAAGAAGAAGAAGAAGAAATCAATTCAA
TAATGAATAAAGAATATCAATTCAATAATGGAAATTAAACATCGCAAGTT
CATTCACTGTCAACATGAAACTTGTGGGGCTGTACGTACAGGGGAAGAGG
GCGGAGGGAGAAAGCCCACCTCCGCGTCTAATCCCTGTGCTCTGGCCCTG
TCAATCCTTAGGGTGGGTGNNNNNNNNNNNNNAAGCAAACTTGTTCACTG
NNNNNTGNNCGCNNAGGACGTGGAGGGANCCCCTCCCCCCNNNNCTCTTN
NNTCCGCGCTGGGGGCCGTGGTACGCAATCTTCCCTTCCCTCCTCTCGCT
TCCTTTCCTTTTACCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_p15.g1 MSMg01no392_p15.g1 CHROMAT_FILE:
MSMg01no392_p15.g1 PHD_FILE: MSMg01no392_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:42 2005
         (333 letters)



>mm_chr1_31614754_31615486
          Length = 733

 Score =  613 bits (317), Expect = e-180
 Identities = 329/333 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgttctcattttctgttgggtatctttcttcatgagacagagcctcagctttcctact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgtgttctcattttctgttgggtatctttcttcatgagacagagcctcagctttcctact 426

                                                                       
Query: 61  ctctcccttatacctgctctattctttgtcttcaggcttaaaagtggaaacagtcaccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctctcccttatacctgctctattctttgtcttcaggcttaaaagtggaaacagtcaccag 366

                                                                       
Query: 121 gggcatattaccatccattaccagtgtcatatattctgtttactcctctgtaagcaatat 180
           ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 365 gggtatattaccatccattaccagtgtcatatattctgcttactcctctgtaagcaatat 306

                                                                       
Query: 181 gttttatctcatctattttaattagctcacttaagtcatataacatttgagtatatttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gttttatctcatctattttaattagctcacttaagtcatataacatttgagtatatttct 246

                                                                       
Query: 241 tgactcatctctatgatccaatgcttaacggtacatatacacaccaaggagacgaagaag 300
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tgactcatcacaatgatccaatgcttaacggtacatatacacaccaaggagacgaagaag 186

                                            
Query: 301 aagaagaagaagaagaagaagaagaagaagaag 333
           |||||||||||||||||||||||||||||||||
Sbjct: 185 aagaagaagaagaagaagaagaagaagaagaag 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 30
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)