Query= MSMg01no393_h18.b1 MSMg01no393_h18.b1 CHROMAT_FILE:
MSMg01no393_h18.b1 PHD_FILE: MSMg01no393_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:26 2005
(475 letters)
>mm_chr1_165310506_165311381
Length = 876
Score = 777 bits (402), Expect = 0.0
Identities = 417/426 (97%), Gaps = 8/426 (1%)
Strand = Plus / Minus
Query: 58 ttgc-ttggttttgagccaggatcttgctgggtatcccaagctttcctaggattctccca 116
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttgcattggttttgagccaggatcttgctgggtatcccaagctttcctaggattctccca 474
Query: 117 atttcaccagttttgaacttaggttgtcccccagctccagcctgattgttatctgcccag 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 atttcaccagttttgaacttaggttgtcccccagctccagcctgattgttatctgcccag 414
Query: 177 gctagtatctgaaaccaccagtccctgttacccaatccttgggaatactgttatcatact 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gctagtatctgaaaccaccagtccctgttacccaatccttgggaatactgttatcatact 354
Query: 237 tgccataactgtggcattcctccagctctgctgtctgttagccacccctatatccaaggg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 353 tgccataactgtggcattcctccagctctgctgtctgttagccacccctatatccgaggg 294
Query: 297 tcatagagaattttaggcttagctccctcacccccc-------acccaaggtcacctcag 349
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 293 tcatagagaattttaggcttagctccctcacccccccccccccacccaaggtcacctcag 234
Query: 350 cccttttagtctgtatatactaggcagtttctctggccataatacctactacaacgattt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 cccttttagtctgtatatactaggcagtttctctggccataatacctactacaacgattt 174
Query: 410 ctaagacttgctaccttctggaacccaactaagaaatacactaagaaataattgacttaa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 ctaagacttgctaccttctggaacccaactaagaaatacactaagaaataattgacttaa 114
Query: 470 tacttt 475
||||||
Sbjct: 113 tacttt 108
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 876
Length adjustment: 10
Effective length of query: 465
Effective length of database: 866
Effective search space: 402690
Effective search space used: 402690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_h18.g1 MSMg01no393_h18.g1 CHROMAT_FILE:
MSMg01no393_h18.g1 PHD_FILE: MSMg01no393_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:26 2005
(446 letters)
>mm_chr1_165143909_165144754
Length = 846
Score = 847 bits (438), Expect = 0.0
Identities = 444/446 (99%), Gaps = 1/446 (0%)
Strand = Plus / Plus
Query: 1 actcgactgattgcttccatctgggtaccattctccctgtttcttttatcttctattcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcgactgattgcttccatctgggtaccattctccctgtttcttttatcttctattcct 260
Query: 61 ataaactgggagtttggtataaagaaataattagcttcaggttaaatatgttgaatatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaactgggagtttggtataaagaaataattagcttcaggttaaatatgttgaatatgg 320
Query: 121 agactttatagaggatgcaatgcatttcggtttatgtcgcatcgtgtggcaaacaaaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agactttatagaggatgcaatgcatttcggtttatgtcgcatcgtgtggcaaacaaaaca 380
Query: 181 aaacaaaacaaacaaacaaacaaaaaacccagactgtcctgctttagctaatacagtctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacaaaacaaacaaacaaacaaaaaacccagactgtcctgctttagctaatacagtctg 440
Query: 241 agcacttattaagatggtaaaaatcagatatttccattgtaatgtgttctcttttttaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcacttattaagatggtaaaaatcagatatttccattgtaatgtgttctcttttttaaa 500
Query: 301 gacatttattaaaaagtaaactgtggatccatatgagtatacaaattttaattattattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacatttattaaaaagtaaactgtggatccatatgagtatacaaattttaattattattt 560
Query: 361 atttttttgtagatttggtaatctttaacacactcaaaatttttaaccactaaattggaa 420
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attttttt-tagatatggtaatctttaacacactcaaaatttttaaccactaaattggaa 619
Query: 421 aatgatacatattttcaattataatt 446
||||||||||||||||||||||||||
Sbjct: 620 aatgatacatattttcaattataatt 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
