BAC Information

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BAC

Clone NameMSMg01-393J16
Chromosome1 (Build37)
Map Location 97,291,642 - 97,292,068
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666025, LOC100040685, LOC383603, Tmem157
Downstream geneLOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393J16.T7 (MSMg01no393_j16.b1)MSMg01-393J16.TJ (MSMg01no393_j16.g1)
ACCAG494860AG494861
length7881,341
length of high quality
(start - end)		452 (32 - 483)---
definitionCHROMAT_FILE: MSMg01no393_j16.b1 PHD_FILE: MSMg01no393_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:36 2005CHROMAT_FILE: MSMg01no393_j16.g1 PHD_FILE: MSMg01no393_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTCGCTATACGACTCACTATATCCAGAGGATCCGCGGAATTCCTAACAC
TCTCACGTGCCTCACTTTCCTGTGAGGAATCAAAGTGCACTCCGTGGAAG
TGGTGGATTTTCTGCCTGCTGTATCTGAGCTCAGAGTTGCTTTTTCATGC
ATGGCAAATGTCTGACCAGGGCTGACAGAAGCAGGAGTGTTTGGAGAAGC
GGTCTAAAAAATCACAGACAGAATATACACACCATCCAGATGTGAGAAGG
AAAACTACAATGAATGAATAAATGAATGAATACCATCCTTGCTGTTCTCA
GACAGAAGTGTCATATTTTCGTGCAGGGCCTCACAAGACTTTCATTTCTG
ACACCAACACCCATGTGACAAGAGCATCCTGATACAATGTTGGAAAACTC
CCCCTCCCTTTGTCTGTCTGCAGTGCTTTAAAAGAAGAGTCTCATAAACA
AATTCAGGGAGTGGTGTTGATGTTTGGAGAGTGCTCTTATACTGGTTCAC
TTTGCTTTGAGAATGAAGCCTTAGTTCAACTCCATGTTCCAGTGACTTGG
GACGCATCCCGATGTCTTGCTACTCATACAGTGTTCTGGAAAAATACTTA
TACCCGATGGTTGAACACATACACTTTTTCATGTCCTCTTTGCTTTTTCA
ATGCCTAAGGTTGGACCCTCCTGTGTTTTAATTTATAAAATTAATCTTCT
CCTCTTCTAATTTTTTCCCATACTTTTAGTACCAATTTCACCCTTTCGAC
AACAAATCATCCTACCCTCTTTTCTCATCACTTAAATC

AAAGAGTATCGTGAGAGCGCGGCTCGTGGACTATCTCACTCACCATCTCA
GTGNNCTTNCATNNTTCTTTGGTATACTTCTGGCCGTCGACGAGAAAGTN
AGTGTCTGTAGTGGACAGCATAAGGATACTGAGTATGCAGAGNTGATGTA
GTTGAGAGAGGCGATGGGAGAAGGGGAGACGGAAACAAATATACTATTAA
TAATTATAGNTATCTTGTTGTGATGTGCTGCTCTTCGACACGCGAATCCG
CTTGCTCGCGCCACACTTCGGCGCTCATCTACGACACGCTCTCTNTATAT
GTTAGCGGTGTTGCTCTGAGCTTCCTTACTGGGCCTCGCTTGCGGACTCA
GCCATCACCCCATACGACTAGTTCTCACGCTCCGCGCACCAGTTGTTTGC
TGTGTGGAGTGGGTTGCGCGTTCGATGGGTGGTGTGTGTGTCTCATGTAT
TATCGTCTCTCACCTAATTCTCTCTTACCCACATATAGTACGTAGTGTAA
CGCCGTCACTCGTGTCTTTGTATTGATTAGAGATAGAAGGCGTGCGATGG
CTGTCCGTGGTATCCTCCATACGAGAACTGTAGTTAGTAGGGATAATATG
ACGTCGCGTTGTAATACCACCCTAACTATATTCTAATCTAACTATGATCG
ACACACTACCATCCTAGGCCATACCGTTTATGTCAACATTTACCTTACCC
ACACCGGCAGACTGTGCGTGTCGTTCTCCTGTCTTTCACTCACTATTATC
ACCACATACTGTGAGACGGTATGACACATTAATGATCACAATACAATACT
AATCGCCGTCTCTAGCCGCGACGCACGCCAATGCAGGTATTATCCAATAC
AGTCTCGCGTCGAGTCCATCGTTGATGTTCAGATAAGCTGGACATAGTTC
GATGCTTATCGCACGGCATCGTATCTTGTTGATATGTAGTCATATGTCGA
TTTCTTGTTAGCTTCGCTCTCTNCGTGAAGTTTATGCGCCTGCGAAGCGC
GCTGTTACACAGAGGTTCATCTATCACTAGAATTAGCATACATGCACCTC
GTTGATAAGTTCGCTCATGGNCATACTCCTCTGCAGCTATATTACTGTCC
ACCGTATAGTCGCACTCAATAACCGTCTCTATACGAGTAGAGTGATACTC
ACATGACGCTAATAAGTAATAGAGCGGCGCNGCGCGCGGCTGGTGTATGT
CGGCGGTAGCTTCTACACCTCTCTTTGTCTTGTGTCAGTAGCGGCGGTGT
CGACCGACGCCTGTGCGACATTCGAGAGCGTGTGGGATANCNACTGCTTA
TGTGATGCTCAACGAATTGTGGCTGTGTGGTCGGGGGCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_j16.b1 MSMg01no393_j16.b1 CHROMAT_FILE:
MSMg01no393_j16.b1 PHD_FILE: MSMg01no393_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:36 2005
         (452 letters)



>mm_chr1_97291642_97292493
          Length = 852

 Score =  779 bits (403), Expect = 0.0
 Identities = 421/427 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   gcggaattcctaacactctcacgtgcctcactttcctgtgaggaatcaaagtgcactccg 63
           ||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gcggaattcctaacactcaaatgtgcctcactttcctgtgaggaatcaaagtgcactccg 368

                                                                       
Query: 64  tggaagtggtggattttctgcctgctgtatctgagctcagagttgctttttcatgcatgg 123
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 367 tggaagtggtggattttctgcctgttgtatctgagctcagagttgctttttcatgcatgg 308

                                                                       
Query: 124 caaatgtctgaccagggctgacagaagcaggagtgtttggagaagcggtctaaaaaatca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 caaatgtctgaccagggctgacagaagcaggagtgtttggagaagcggtctaaaaaatca 248

                                                                       
Query: 184 cagacagaatatacacaccatccagatgtgagaaggaaaactacaatgaatgaataaatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cagacagaatatacacaccatccagatgtgagaaggaaaactacaatgaatgaataaatg 188

                                                                       
Query: 244 aatgaataccatccttgctgttctcagacagaagtgtcatattttcgtgcagggcctcac 303
           |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 187 aatgaataccatccttgctgttctcagacagatgtatcatattttcgtgcagggcctcac 128

                                                                       
Query: 304 aagactttcatttctgacaccaacacccatgtgacaagagcatcctgatacaatgttgga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 aagactttcatttctgacaccaacacccatgtgacaagagcatcctgatacaatgttgga 68

                                                                       
Query: 364 aaactccccctccctttgtctgtctgcagtgctttaaaagaagagtctcataaacaaatt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  aaactccccctccctttgtctgtctgcagtgctttaaaagaagagtctcataaacaaatt 8

                  
Query: 424 cagggag 430
           |||||||
Sbjct: 7   cagggag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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