BAC Information

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BAC

Clone NameMSMg01-393L19
Chromosome1 (Build37)
Map Location 100,316,415 - 100,316,588
singlet/doubletsinglet
Overlap genenone
Upstream geneEG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887
Downstream geneSlco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393L19.T7 (MSMg01no393_l19.b1)MSMg01-393L19.TJ (MSMg01no393_l19.g1)
ACCAG494960AG494961
length761799
length of high quality
(start - end)
470 (38 - 507)175 (66 - 240)
definitionCHROMAT_FILE: MSMg01no393_l19.b1 PHD_FILE: MSMg01no393_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:48 2005CHROMAT_FILE: MSMg01no393_l19.g1 PHD_FILE: MSMg01no393_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACC
CAAGAGGAGTAGAGGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACC
AAGTGGAAACAAGAAGAATTATTCAAAAAATCAACCAATGGAGGAGCTGG
TTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAG
AGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAACTGAAAAGGGAG
ACATAACAACAGATCCTGAAGAAATAAAAAACAACATCAGATCTTTCTAC
AAAAGGCTATACTCAACAAAACTGGAAAACCTGTATGAAATGGACAAATT
TCTAGACAGATACCAGGTACAAAATTTAAATCAGGATCAAGTTAATGATC
TAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTCATTAGTAGTCTC
TCAAACAAAAAAAGCCCATGACCAGATGGGTTTAGTGCAGAGTTCTATCA
GACCTTCTAAAAAGATCTAATTCCAGCTCTGCACAAACTATTTCACAAAA
TAGAAGCAGAAGGGATTCTACCTAATTCATTCTATGAAGCACCATTACTC
TGATACCTAAACCCCAAAAGACCCCCCAAAGAAGAGAACTCNGATCAATT
CCCTTATGATATCGAGGGGAAAAACCCATTAAATTCTCGTTCCCCATTCA
GGAACATTATAAAATCTTCTTCCGGACAAGAGGTTTTATCACCGAACCGG
GAGGTTTAATA
TTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCTTCTTCTCCCTGATACTAGACTCCTCGTAACC
CAAAGGTAGAAGGAGCAAGATAATTGTGAAACAAGAAAAGCACTGGAAAT
TTTGTTTCTAGTAATAATATAGAAATCCAAGAGAACACTATTCTAACAGC
CAATCAAGATATTCTGAATCAATCAATATTTGGTGTGGTCCAGCAGAGAG
CTGAATTTGTAATCAACTGGTACATTCACTACAAAGGGTAAGAAGCTATT
AGTAAACAATACAGAGCATTCTTGTATCTGTTTAAAACGACATACATATG
GAAAGAATCATGGTAAAATGGAACATTGGAAGCTGGTGAAGCTTTACTGA
CTTTTTTAGACTTACCCTTCGGTCTGTGTCTCTTTTACCCTATTGTGACT
TGTGCCTTGATGACTCTTTTTTCCTATTCTGCTCGCCTTTTGTTAAATCC
TTATTCTTCTTGAACTTCTTCGTCTTTTTTGCCTCTTCTCTCTCTATTCT
CTCTTTTTTTTTGATATACTTTTGTTATTGTTAATTAATCCACTTTTGCT
CTCCTCCCCCTTCCTACTCTCTCATTTTTCTTATTCTTATATATTTTGCG
TCCTCTTCCTTTTCTATATTCACTTTTCTCTTTTGCCCTGTTCTTTATTA
TCCTCTATTTTTTTTTCTCCACCTATTTGCTCCACTCCCACCTATTCACC
TACCTCTACTTTTTTACACCTTCACTTATCTTTTCTTCTTCATAGTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_l19.g1 MSMg01no393_l19.g1 CHROMAT_FILE:
MSMg01no393_l19.g1 PHD_FILE: MSMg01no393_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:48 2005
         (175 letters)



>mm_chr1_100316215_100316789
          Length = 575

 Score =  329 bits (170), Expect = 7e-95
 Identities = 173/174 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttcttctccctgatactagactcctcgtaacccaaaggtagaaggagcaagataatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttcttcttctccctgatactagactcctcgtaacccaaaggtagaaggagcaagataatt 315

                                                                       
Query: 61  gtgaaacaagaaaagcactggaaattttgtttctagtaataatatagaaatccaagagaa 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 314 gtgaaacaagaaaagcactggaaattttgtttctagtaacaatatagaaatccaagagaa 255

                                                                 
Query: 121 cactattctaacagccaatcaagatattctgaatcaatcaatatttggtgtggt 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cactattctaacagccaatcaagatattctgaatcaatcaatatttggtgtggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)