Query= MSMg01no394_c19.b1 MSMg01no394_c19.b1 CHROMAT_FILE:
MSMg01no394_c19.b1 PHD_FILE: MSMg01no394_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:27 2005
(461 letters)
>mm_chr1_181275444_181276304
Length = 861
Score = 876 bits (453), Expect = 0.0
Identities = 456/457 (99%)
Strand = Plus / Plus
Query: 5 gaattctcattctactcagagcattaatattgatgagctgtcctgactcaggagaggaac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcattctactcagagcattaatattgatgagctgtcctgactcaggagaggaac 264
Query: 65 gtgattagaaaacaaaggatttattttcccaataactaaaagagtatgtattgtaaaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgattagaaaacaaaggatttattttcccaataactaaaagagtatgtattgtaaaaag 324
Query: 125 gcaacagatcaggatatgacactcaccagggcataagcacaggaggggccagagtgggta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaacagatcaggatatgacactcaccagggcataagcacaggaggggccagagtgggta 384
Query: 185 aataggggctgttattttattttgataaaagtatccccttgatgttggcacacagaacag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aataggggctgttattttattttgataaaagtatccccttgatgttggcacacagaacag 444
Query: 245 tacaaatatcagagtagcaggctccaaatgaacatgtcaggaaagactcaaaccaagact 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tacaaatatcagagtagcaggctccaaatgaacatgtcaggaaagactcaaaccaagact 504
Query: 305 gccactagggagctctggattgaaagggcaccattaagtcaacaaaaagaaacagatccc 364
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gccactagggagctccggattgaaagggcaccattaagtcaacaaaaagaaacagatccc 564
Query: 365 cttgtctctgtgatgaacagttcacctccaaaaggtacttggttagttcctaactactta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttgtctctgtgatgaacagttcacctccaaaaggtacttggttagttcctaactactta 624
Query: 425 gcctacaataatgacaaacattcttttctatgtaaaa 461
|||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcctacaataatgacaaacattcttttctatgtaaaa 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_c19.g1 MSMg01no394_c19.g1 CHROMAT_FILE:
MSMg01no394_c19.g1 PHD_FILE: MSMg01no394_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:28 2005
(451 letters)
>mm_chr1_181463321_181464171
Length = 851
Score = 762 bits (394), Expect = 0.0
Identities = 408/419 (97%), Gaps = 10/419 (2%)
Strand = Plus / Minus
Query: 43 acgtatacagtaagctgtatatgttgccatttgttttcagaaaggaaaactctacttgaa 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 acgtatacagtaagctgtatatgttgccatttgttttcagaaaggaaaactctacttgaa 792
Query: 103 agttctcgtggttaatattttgtacttagttctcttttatgtttgttaagacagagactc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 agttctcgtggttaatattttgtacttagttctcttttatgtttgttaagacagagactc 732
Query: 163 tttatatagtcctgtctatc----------cagagatcctcctgcctctgcctcctgaga 212
|||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 731 tttatatagtcctgtctatcctggaactcacagagatcctcctgcctctgcctcctgaga 672
Query: 213 actaggtttaaaggccatgcctggccaattctcatcttttaatttaaaattttagatgct 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 actaggtttaaaggccatgcctggccaattctcatcttttaatttaaaattttagatgct 612
Query: 273 attaagatgtttcaattaaatccaacatttgatatttattaagattctatgtgacataat 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 attaagatgtttcaattaaatccaacatttgatatttattaagattctatgtgacataat 552
Query: 333 tttgtttgtttttactagaaactgatagcgactcctaaaagaccggatttatatcaagta 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tttgtttgtttttactagaaactgatagcgactcctaaaagaccggatttatatcaagta 492
Query: 393 atggctgttctttggcaagtggcctgtgacgttaagttcctgcacatgntgagtgacat 451
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 491 atggctgttctttggcaagtggcctgtgacgttaagttcctgcacatggtgagtgacat 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space: 370881
Effective search space used: 370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
