Query= MSMg01no394_e05.b1 MSMg01no394_e05.b1 CHROMAT_FILE:
MSMg01no394_e05.b1 PHD_FILE: MSMg01no394_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:35 2005
(434 letters)
>mm_chr1_82638298_82639128
Length = 831
Score = 698 bits (361), Expect = 0.0
Identities = 397/415 (95%), Gaps = 15/415 (3%)
Strand = Plus / Plus
Query: 20 gaaggctgtgaaatctcatcagttcgctccattaactcacaatttatgacaattaaggca 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gaaggctgtgaaatctcatcagttcgctccattaactcacaatttatgacaattaaggca 279
Query: 80 gaggcagagctaaagtattttttgtttgtttacaaacctcttcttcctcggaggtattaa 139
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 280 gaggcagagctaaagtatttt---tttgtttacaaacctcttcttcctcggaggtattaa 336
Query: 140 ttaatcgttcaacaatatgaaaagtaactcttaaaattacttcaaagaaagcacattttg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttaatcgttcaacaatatgaaaagtaactcttaaaattacttcaaagaaagcacattttg 396
Query: 200 agctatctaaataagacatatatatatatgtatatatatatgtatatatgtgtatatata 259
||||||||||||||||||| | |||| |||||||||| ||||| ||||||||
Sbjct: 397 agctatctaaataagacat---t-tata--tatatatata--catata----tatatata 444
Query: 260 tacttataggataattttaatacttattttatctataggtaatatatgtataactcactt 319
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tacttataggataatttcaatacttattttatctataggtaatatatgtataactcactt 504
Query: 320 gcactagggttcgcccctctccacctaagctgtgaatgaatgtagcatgttcatatttac 379
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcactagggtccgcccctctccacctaagctgtgaatgaatgtagcatgttcatatttac 564
Query: 380 tctggaatgtctctctttgtacttgaacttgtatccaggcatatgttgagtccca 434
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctggaatgtctctctttgtacttgaacttgtatccaggcatatgttgagtccca 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 831
Length adjustment: 9
Effective length of query: 425
Effective length of database: 822
Effective search space: 349350
Effective search space used: 349350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_e05.g1 MSMg01no394_e05.g1 CHROMAT_FILE:
MSMg01no394_e05.g1 PHD_FILE: MSMg01no394_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:35 2005
(379 letters)
>mm_chr1_82796966_82797749
Length = 784
Score = 636 bits (329), Expect = 0.0
Identities = 365/385 (94%), Gaps = 15/385 (3%)
Strand = Plus / Minus
Query: 1 aattcctgatttcctgcctttacatccctagtgctaggagtagagatgtgtatcattgaa 60
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 580 aattcctgatttcctgcctttacatcactagtgcttggagtagagatgtgtatcattgaa 521
Query: 61 tctggacttagcccccatttcttgacttgttccctttgtaatagtttgggagagtccctg 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 520 tctggacttagcccccatttcttgacttgttccctttgtaatagtttgggggagtccctg 461
Query: 121 gaggcatgttgggtacagcaggaatatctttggggtgtagttttcaacaccaacttgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gaggcatgttgggtacagcaggaatatctttggggtgtagttttcaacaccaacttgttt 401
Query: 181 cctggccattgagccaggcacgattgggggagagaatgggg-----gtggggctcatctc 235
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 400 cctggccattgagccaggcacgattgggggagagcttggggtgggggtggggctcatctc 341
Query: 236 actcccacccattattttt-----cagccccaccttctcttgaatctcttaagggtctcc 290
|||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 340 actcccacccatta-----gggaacagccccaccttctcttgaatctcttaagggtctcc 286
Query: 291 acactttgagctactgacacacaatgaaaagcataatatatttctgacccacttgcccaa 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 acactttgagctactgacacacaatgaaaagcataatatatttctgacccacttgcccaa 226
Query: 351 tttctctcttccctttaagatattg 375
|||||||||||||||||||||||||
Sbjct: 225 tttctctcttccctttaagatattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 784
Length adjustment: 9
Effective length of query: 370
Effective length of database: 775
Effective search space: 286750
Effective search space used: 286750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
