BAC Information

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BAC

Clone NameMSMg01-394J12
Chromosome1 (Build37)
Map Location 111,615,036 - 111,615,446
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626474
Downstream geneEG666508, Cdh7, LOC100041429, EG626652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394J12.T7 (MSMg01no394_j12.b1)MSMg01-394J12.TJ (MSMg01no394_j12.g1)
ACCAG495614AG495615
length777766
length of high quality
(start - end)
89 (326 - 414)415 (80 - 494)
definitionCHROMAT_FILE: MSMg01no394_j12.b1 PHD_FILE: MSMg01no394_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:01 2005CHROMAT_FILE: MSMg01no394_j12.g1 PHD_FILE: MSMg01no394_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTATACTTGCGTCGCTAAAAGAANCCTATTTCAACACAAGCGNNGGAA
NNCCCGTCTTGCCTTAAAAACCAGCTGNNGANAGGGCCAGAAGAGAGCTA
GACTTCCAGGAGTTTTGACCACCCTGTGAGCACAGGTAAGGCCACCACTG
CTGTTCATAGACAAACACTACCTCAGAGTAAATTGCTGGAAAATAATTTT
CCAAGAAAATGGTCCCAATAATCAAGCTGAAGTAGCTGTTCTGATATTGA
TTAAAATCGACTTTCAAAAAAAATTCTTCAAAAAAGATATGGAAGGACAC
TTCATAATCATCAAATTGATANNCTACCAAGAAGAACTCTTCAATTTTGA
TCATTTATGCTACAAATGCAAGGGCACCCACTCACATTCATAAAAGAAAC
TTTACTTAAGCTCACCCCACACATTGTACACACAAAGTACACAATAGTAG
CAGGGGATTTAAACTCCCTAATCTCATCAATGGACAGACCAGGAAAACCA
ATATGAAATAGAGATATAATGAAACTAACAGAACGTATGGATTAAATGCA
TCTAACAAATGCCCATAGAACTTTTCTACCCTACCCACTAGAATACTACC
TCCTTCTCCAGTATCTCACTCTTAGGGTCACCTTCCACATAAACTGATTT
ACACAACCCCGATTCTGTATTCATGAAGAACCTCCAAACTCCTCCGTATC
AACAGAACTCCCAAAACCACCCTTCTGAAAGGCGGCAATAGAACCTCCTT
GTGCTCCCTTGGTATCCGGTACTACCA
TTCCGATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCCAAAAGTGGCACATTT
TTATCACACCACAACAATTTAGAAGAGGGAGATGAAAGTTTGTAAAACTT
AGAGGGCAGGGAGGATTTTAAGATTTGTATGCTGAGAATCTTACATTTTA
TTATATTGTAGTCATATTGAATATGAGGACTTAATCTTTCTGAATTTTGG
AAAAATGTTTTGTCTCAGGATCTAGGTAGTATAACAGAAGATTTTTAGCT
TCAAATGGTTTGTACTTTCTTTTATATTCTTATGAAATAATGAGCTAATC
TTTACAGATAATTTCTAAGAAGAAAAATAACTATTTTTTTAGGTAACTTG
ATAATTTGATATCCATTTCACCCACACTTTTCCAGGAATATGATGCTTAA
TGGCAATTTAATTTTATGACCTATATATAAGTCTGATTATAATTTAAATA
CACTAAGTATTTCATTTGTTGTTAAAGGAATAAAATGCCTTTTGCTAATA
TGTCTAACTCTTCTCATTAGTTACAATGAAGTTACCATAGATAGAATATG
CTGTTCGATTAGCATAATTTTTTCCCTCACAACTTGCAACCAGGATGTTC
TTTCTCCCCGCAGGACCGAGGCTCATACTTTTACCACCCGCTTGTTCTTC
CTGACCACCAGGCTATACTTGTCCCCCCTTTTCCCCTCAATTCCAGGCCC
CTAATTCTTTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_j12.g1 MSMg01no394_j12.g1 CHROMAT_FILE:
MSMg01no394_j12.g1 PHD_FILE: MSMg01no394_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:01 2005
         (415 letters)



>mm_chr1_111614836_111615650
          Length = 815

 Score =  712 bits (368), Expect = 0.0
 Identities = 401/412 (97%), Gaps = 2/412 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagccaaaagtggcacatttttatcacaccacaacaatttagaagagggagatgaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagccaaaagtggcacatttttatcacaccacaacaatttagaagagggagatgaaagt 260

                                                                       
Query: 61  ttgtaaaacttagagggcagggaggattttaagatttgtatgctgagaatcttacatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtaaaacttagagggcagggaggattttaagatttgtatgctgagaatcttacatttt 320

                                                                       
Query: 121 attatattgtagtcatattgaatatgaggacttaatctttctgaattttggaaaaatgtt 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attatattgtagttatattgaatatgaggacttaatctttctgaattttggaaaaatgtt 380

                                                                       
Query: 181 ttgtctcaggatctaggtagtataacagaagatttttagcttcaaatggtttgtactttc 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatctcaggatctaggtagtataacagaagatttttagcttcaaatggtttgtactttc 440

                                                                       
Query: 241 ttttatattcttatgaaataatgagctaatctttacagataatttctaagaagaaaaata 300
           |||||||| |  | ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ttttatatacaaaggaaataatgagctaatctttacagataatttctaacaagaaaaata 500

                                                                       
Query: 301 actattttttt-aggtaacttgataatttgatatccatttcacccacacttttccaggaa 359
            |||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 501 -ctattttttttaggtaacttgataatttgatatccatttcactgacacttttccaggaa 559

                                                               
Query: 360 tatgatgcttaatggcaatttaattttatgacctatatataagtctgattat 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatgatgcttaatggcaatttaattttatgacctatatataagtctgattat 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)