BAC Information

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BAC

Clone NameMSMg01-394M22
Chromosome1 (Build37)10 (Build37)
Map Location 179,199,471 - 179,199,74172,261,793 - 72,261,987
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePld5, Cep170, Sdccag8, LOC666235, Akt3
Downstream geneZfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394M22.T7 (MSMg01no394_m22.b1)MSMg01-394M22.TJ (MSMg01no394_m22.g1)
ACCAG495776AG495777
length816813
length of high quality
(start - end)		428 (49 - 476)195 (78 - 272)
definitionCHROMAT_FILE: MSMg01no394_m22.b1 PHD_FILE: MSMg01no394_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:19 2005CHROMAT_FILE: MSMg01no394_m22.g1 PHD_FILE: MSMg01no394_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:19 2005
singlet/doubletsingletsinglet
BLAST hitpluralunique
Map location.(179,199,471 - 179,199,741)(72,261,793 - 72,261,987)
sequence
NTTCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTTGTGTCTCAGTTGGGCTTAACACGCACAAACCTCAACAC
ACCCAGCATAATCCTCTTTGTAGTTTTAGCCTTTTTCTTCCAGAAAATAG
GCTTAGACTGCCCACCAAAGCCACCGTGTTTCCTGTCCCAAGCTTGCCTC
CCCTGGGGAGACGGGGCGTCCTTGCCCTTTGTGTACTGTGTCATTTCATC
AGGCTGGTACTTGCCATACTTCTTGCAGAAAACCCAGCTTTCTTTAGGAA
TGTTCTCCATATTGGCAGAAGAGACATCTTTAGACTAGTAGCCATAGAAG
GGAAAGCAGACATGTTCTGTTTCTTTACTTTTCTACCTTATATGCCTCCT
CCATCACAAAGCTAGTCTGAGTAAGGGACTAAACAGTCCTTACACTCATG
GAGACATGTTAGCCAGCTTTGCATGAAGGAGAAGCTAGGTGATTTGCAGG
CTCAGGTACAAAATTAAAATGTCATACCCTTTTGTTGAGGAAAATTAAGG
CTTTCTCTGATAGTACCAAGAATCCCTTTAACCAACCCCGGGGTTTTTTT
TTGGGGCCATTCCCTTAATAATGGTTTTTCCGAAGGCCCGTCCTCGTGGT
TTCCTTATAATGTTCGTAACCCACATCCCTCTCTTTCTATCCCTTCGGGC
AAACCGCCTCCCCCCTTCTTCGCCCGCTCCCCACTTCCTCCCTTTTACTC
CTCCTTTCTGCTAATCCCTGCCATTATTAATCCCCCCCCTTTTGCGTCCC
GCGTAATTTCTTTCTN

NNCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTGTCAAGGACTCTTAAGGGA
ATGGAAGTGTAGGCAGCGATATAGATAGACAATAGGTTGGTGAACAGTGG
AAGATAGCTGTGTACATAATGGGTAAGTAGTTGATAGATTACACATAAAT
AATGTGTAGATGATAGAATAAATGATAGTGATTTATGATAGAACGTAGAT
AAATGGGAAGATGGATTCACTCAGATGCTTATACAGACTGATTAGTCCAG
TGTCTGCCTCGCAGGCTTGTATCCTCTTTTTTACCTGAGATAGTTAACGA
CCCATTTGAGCGCCTTCTGAAACTTGCTGAACTATCTAGGAGCCTCTATC
CGAGGACAGTGCACTGAACCCACTTGAAAAAAATTTACCCTGCCCTGGAC
AGCCCCGCCATTTTTCCCTTCCCCTTGCGTTGCACTCTCCCCTATACCCT
CTTATTCCGATTGCCTCCTTTCCCGAACCCCACCACTCACATCCCACTTC
CTTTTTTATTTCCTCCCTCGCTTTGTTTCCCACTACCGCCCTTTCCTCCC
TCCCTTTTCCCATCCCCCTTCTCTTTGTTGTTTCCCCTCCCTAACTCCTT
CCTTCCATTTCTCCACGTCCCCTCCCCTACTCTTTCCCCCCCTTTATTTT
TCTTCCTCTTGACCCCTCCTCCCCTTTTACCCTCTTCTGCCTTTCTCACC
TTTCTTACCTTTCTTACTCCTCCTTCTCTTCCATTCTATTCCCTCTCTCC
CCTCCTTCTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_m22.b1 MSMg01no394_m22.b1 CHROMAT_FILE:
MSMg01no394_m22.b1 PHD_FILE: MSMg01no394_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:19 2005
         (428 letters)



>mm_chr1_179199268_179200095
          Length = 828

 Score =  485 bits (251), Expect = e-141
 Identities = 266/271 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcttgtgtctcagttgggcttaacacgcacaaacctcaacacacccagcataa 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ggaattctcttgtgtctcatttgggcttaacacgcacaaacctcaacacacccagcataa 415

                                                                       
Query: 64  tcctctttgtagttttagcctttttcttccagaaaataggcttagactgcccaccaaagc 123
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tcttctttgtagttttagcctttttcttccagaaaataggcttagactgcccaccaaagc 355

                                                                       
Query: 124 caccgtgtttcctgtcccaagcttgcctcccctggggagacggggcgtccttgccctttg 183
           ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 354 cactgtgtttcctgtcccaagcttgcctcccctggggagacggggcatccttgccctttg 295

                                                                       
Query: 184 tgtactgtgtcatttcatcaggctggtacttgccatacttcttgcagaaaacccagcttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 294 tgtactgtgtcatttcatcaggctggtacttgccatacttcttgcagaaaacccagcatt 235

                                          
Query: 244 ctttaggaatgttctccatattggcagaaga 274
           |||||||||||||||||||||||||||||||
Sbjct: 234 ctttaggaatgttctccatattggcagaaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no394_m22.g1 MSMg01no394_m22.g1 CHROMAT_FILE:
MSMg01no394_m22.g1 PHD_FILE: MSMg01no394_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:19 2005
         (195 letters)



>mm_chr10_72261593_72262187
          Length = 595

 Score =  377 bits (195), Expect = e-109
 Identities = 195/195 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttgtcaaggactcttaagggaatggaagtgtaggcagcgatatagatagacaataggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttgtcaaggactcttaagggaatggaagtgtaggcagcgatatagatagacaataggt 260

                                                                       
Query: 61  tggtgaacagtggaagatagctgtgtacataatgggtaagtagttgatagattacacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtgaacagtggaagatagctgtgtacataatgggtaagtagttgatagattacacata 320

                                                                       
Query: 121 aataatgtgtagatgatagaataaatgatagtgatttatgatagaacgtagataaatggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataatgtgtagatgatagaataaatgatagtgatttatgatagaacgtagataaatggg 380

                          
Query: 181 aagatggattcactc 195
           |||||||||||||||
Sbjct: 381 aagatggattcactc 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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