Query= MSMg01no394_n06.b1 MSMg01no394_n06.b1 CHROMAT_FILE:
MSMg01no394_n06.b1 PHD_FILE: MSMg01no394_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:21 2005
(225 letters)
>mm_chr1_43773037_43773662
Length = 626
Score = 383 bits (198), Expect = e-111
Identities = 216/222 (97%), Gaps = 1/222 (0%)
Strand = Plus / Minus
Query: 5 gaattcatcttctctctctctttggc-atacatccttattccaggatttaaccacctgtt 63
||||||||||| | ||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 426 gaattcatcttttatctttctttggcaatacatccttattccaggatttaaccacctgtt 367
Query: 64 cccatttctacactgaatgatgcatttgtagtagttgccattgccttcctgttttcatta 123
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 366 cccatttctacactgaatgatgcatttgtagtggttgccattgccttcctgttttcatta 307
Query: 124 ttactagggcatttccccacttaattctgtgagaatttgtaaggtatctagatgtgaagg 183
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Sbjct: 306 ttactagggcatttccccacttaattctgtgagaatttgtaaggtatctagatgtgaagg 247
Query: 184 acattgttagggagcccaagatgaatgagccttctgtcctgc 225
||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 246 acattgttagggaacccaagatgaatgagccttctgtcctgc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 626
Length adjustment: 9
Effective length of query: 216
Effective length of database: 617
Effective search space: 133272
Effective search space used: 133272
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no394_n06.g1 MSMg01no394_n06.g1 CHROMAT_FILE:
MSMg01no394_n06.g1 PHD_FILE: MSMg01no394_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:21 2005
(339 letters)
>mm_chr1_43565324_43566062
Length = 739
Score = 603 bits (312), Expect = e-177
Identities = 327/332 (98%)
Strand = Plus / Plus
Query: 1 atttttaaatcaaaatttatgaacttgccttgtaacacatcatgatagtcctgcttgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttttaaatcaaaatttatgaacttgccttgtaacacatcatgatagtcctgcttgaat 260
Query: 61 tatcacttcctatttgagtaaaatagaattcgttttttctgtgcggcttttaccattttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcacttcctatttgagtaaaatagaattcgttttttctgtgcggcttttaccattttg 320
Query: 121 gggacataatcatcctagggatgaattaatagatctcctccaagtgagctgccaggacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggacataatcatcctagggatgaattaatagatctcctccaagtgagctgccaggacag 380
Query: 181 atgccctctgggtttgaaatgattaaagatgccaatgaactctcaggggaatctgcagag 240
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Sbjct: 381 atgccctctgggtttgaaatgattaaagatgccaatgaactctcaggggaatctgcagag 440
Query: 241 tgcaccttatttcccttgaaaatgccagaggaaaccagaagtgtttgcccaagtgtgtgc 300
|||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 tgcaccagagttcccttgaaaatgccagaggaaaccagaagtgtttgtccaagtgtgtgc 500
Query: 301 acagtgactgcactgtcaattccacaagcagc 332
||||||||||||||| ||||||||||||||||
Sbjct: 501 acagtgactgcactgccaattccacaagcagc 532
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|