BAC Information

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BAC

Clone NameMSMg01-394P15
Chromosome1 (Build37)
Map Location 30,741,858 - 30,742,328
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040665, LOC665944
Downstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394P15.T7 (MSMg01no394_p15.b1)MSMg01-394P15.TJ (MSMg01no394_p15.g1)
ACCAG495905AG495906
length1,305770
length of high quality
(start - end)
---470 (78 - 547)
definitionCHROMAT_FILE: MSMg01no394_p15.b1 PHD_FILE: MSMg01no394_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:34 2005CHROMAT_FILE: MSMg01no394_p15.g1 PHD_FILE: MSMg01no394_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATCCCTACTCGCTCTTGGTATATGCGTAACGGTTAAAGCTCCTTTTATC
TCCACTCATGCATCTGTTCGTCCGTACGCAACACGAATACCTCCCAGACG
CTGCGTGGATAGGAGTCCAGGCGAACGGCGGGTGGGCGCTGCTCTGATCG
ATGACGACCCGGCCCGATACCGTTTTTGCCGCTATTGATCTACCTTAGTA
NCGATACAGATTGTTCTCGCTCCATGTCCTTGCACAGCACGCCCTATGGT
AGGCTGCATGTGACCACTAGTGAGTATGTTTGTAACATGCGAGCTCACGG
CCTCGGGTCGATATTACTTATGATTGACCCGTCTGCATATATCTGTCCTG
ACTCGAGTCTGACGCGCTGCGTTATCACTTTTCTGTTCGCTCCGTCATCG
ACTTCAATCAGTACTTACGCGATGATTCTCACCGAAGCGTGGACAGAATA
GAATCTTCCGACTTTTGACACCTGTGTACTTGTCTATACTGCGTACGCTC
TGTATCAACTACTCTTACCCTACCATTCTCTTCGCATACACCCTTACATA
CACTTTCTGCGTGATACTCGCAAGATACCTAATACCGCCACGCGCCACAG
TTGTACCNCACCCCGACGCTTCCAGCGCGTTCCCTGTCACAGATATTATT
AAATTCGTAGCACGCGCGATTTCGCGGCCGGCCGCCACCATATAGCGGAC
GTACATGATCGCGATCCACATTTCTTACGATCCGATCCTTATCCGTCTGT
TCGCGCGCACTAGCGCGTATATCGTTCCGCGTCATCGCGCGTCTCGTGCC
ATCGGTGGTGTAACGCGCATTGTTATACGTATGCGTCCACCACCACACCA
CNCTATTGACCCCATTCGTTTCACACACTCTTTACACGTAGCGCTCGCTT
AACAATATGTACGTGTCTCCACACTAGTGTTCGTTTGTGCACTGTATTAC
CTTATACGCCGGACTATACGGCTTATTCCTTCCTCTCCATACTATGCGCT
GCGCGCGGATTCGCGTTAGCTCGACGTCTGCGGTAGAGCCGCCACTATTC
GCACGATCATTATTACTCACCGATACTCACTCGCGCACCGCGTCGACACG
CGTAACACATCGGGAAACGATGGTGATAATACACATGGAGATANCATACG
CTGCACACTATACTACCCTCACTCCGTTAATTGGTCGACACGCACTCCGC
GCAANTATCACTATCCGCGAATCATANCGCGCATTTAGTCTCACACTCAC
GCCGACTATAGCATTCTCAACCGTCGCGACATATTATTCACCGCATCTCG
TCTCN
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCACCCTCTCTGAGGCTACCAA
GGTTTAGACAGCTTGGATGTCTCAGATAAAGGCAGAGGGATTTTTGCAAC
ACAGCTTGGTGGTCTTAGCATCCTTCTGTGAAGTTACCGAGGAGGGAAAT
CCTTACTCTAGGAAACAACAGGGCCAAGGGAGTAAACCTATGAAGGCCAA
CTTGTCCCATATTGGCACTGCAAAGACACTTACCTGAACTGACCACAGGT
TGGACAGGTGATGAGATGCTGAACCAGTTCAGGCAGTGCAGCCAGGGATA
AAATACCAAAAGCAGAAACTCTTTGTGCTTGTACAGCTGAGGTCCATGGG
GAATACCAAACAAGGTCTTCCTCCCTCCCCCTCCCAGATGGATTCACTGA
AGAATTCAATAGACTTTTAAGGAAGAAGTAAACAGTATTCCTTGTCAAAT
ATTTACATAAAATAGACAAAGGGAGGCATGCACCCAAACTCTTTTTGTGA
TACCAGTATTATTCTGATATCAACATATAAAGACTCAATAAAAATTATAG
GCAAAATTTTCTAGATATAAAATTTCTCCAATAAAAACTTTGCGATTGAA
TTCCGCCACCCCTTTAACACTTTATTATGACCCAGCTGATTTTACTTGAC
AAAAAGCTGGTGTGTTTCCCTCACGTCACCAAATAAGGAGGGCCTCTTTT
AACGGTTTGCTTATCACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_p15.g1 MSMg01no394_p15.g1 CHROMAT_FILE:
MSMg01no394_p15.g1 PHD_FILE: MSMg01no394_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:34 2005
         (470 letters)



>mm_chr1_30741772_30742642
          Length = 871

 Score =  864 bits (447), Expect = 0.0
 Identities = 465/471 (98%), Gaps = 1/471 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcaccctctctgaggctac-caaggtttagacagcttggatgtctcagataaaggcaga 59
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctcaccctctctgaggctacacaaggtttagacagcttggatgtctcagataaaggcaga 498

                                                                       
Query: 60  gggatttttgcaacacagcttggtggtcttagcatccttctgtgaagttaccgaggaggg 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 497 gggatttttgcaacacagcttggtggtcttagcatccttctgtgaagttaccaaggaggg 438

                                                                       
Query: 120 aaatccttactctaggaaacaacagggccaagggagtaaacctatgaaggccaacttgtc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaatccttactctaggaaacaacagggccaagggagtaaacctatgaaggccaacttgtc 378

                                                                       
Query: 180 ccatattggcactgcaaagacacttacctgaactgaccacaggttggacaggtgatgaga 239
           |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 377 ccatgttggcactgcaaagacacttacctggactgaccacaggttggacaggtgatgaga 318

                                                                       
Query: 240 tgctgaaccagttcaggcagtgcagccagggataaaataccaaaagcagaaactctttgt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgctgaaccagttcaggcagtgcagccagggataaaataccaaaagcagaaactctttgt 258

                                                                       
Query: 300 gcttgtacagctgaggtccatggggaataccaaacaaggtcttcctccctccccctccca 359
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gcttgtacagctgaggtccacggggaataccaaacaaggtcttcctccctccccctccca 198

                                                                       
Query: 360 gatggattcactgaagaattcaatagacttttaaggaagaagtaaacagtattccttgtc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gatggattcactgaagaattcaatagacttttaaggaagaagtaaacagtattccttgtc 138

                                                              
Query: 420 aaatatttacataaaatagacaaagggaggcatgcacccaaactctttttg 470
           |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 137 aaatatttacataaaatagaaaaagggaggcatgcacccaaactctttttg 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 871
Length adjustment: 10
Effective length of query: 460
Effective length of database: 861
Effective search space:   396060
Effective search space used:   396060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)