BAC Information

Click to search

BAC

Clone NameMSMg01-395C17
Chromosome1 (Build37)
Map Location 46,990,467 - 46,990,894
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855, Slc39a10
Downstream geneEG227061, LOC666869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395C17.T7 (MSMg01no395_c17.b1)MSMg01-395C17.TJ (MSMg01no395_c17.g1)
ACCAG496051AG496052
length808792
length of high quality
(start - end)
209 (41 - 249)428 (75 - 502)
definitionCHROMAT_FILE: MSMg01no395_c17.b1 PHD_FILE: MSMg01no395_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:55 2005CHROMAT_FILE: MSMg01no395_c17.g1 PHD_FILE: MSMg01no395_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAATTTGGCGGCGCTATACGACTCCTATTGCGAGAGGATCCGCGGAATT
CTTTGTTTATCTCTGTACCCCACTTTTAATGGGGTTCTTTGAATTTCTGG
AGTCCAGCTTCTTGATCTCTTTGTATATATTGGATATTAGTCCCCTATCA
GATTTAGGATTAGTAAAAATCATTTCCCAATCTGTTGGGGCCACCTGAGC
TGTGGGAAGTGCATCAGGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGN
TTNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNTNCNNNTNNNCNNC
CTNNNCCNTCTTTTTTTTTTTTTCCCCTTTTCCCCCTCTCTCCCCTTTTT
TTTTTTTTTCCCCCTTTTCCTTTTTTCCTCCTCNCCTTCTTTTTCCCCTN
CCCCCCCCCCCCCCCCCTTTCTTTCTTCTTCTTCCTTCTCCCCCCCCCTT
TCTCTCCTTTCCTTCCTTTCCTCTTTTCCCTCCTCCCCTTTTTTTCTTTC
CCCTCTTCTTTTCCTCTCTCTTTTTCTTTCTTTTTCTCTCCTTCTCCTCC
TTCTTCCTCCTTTTTTTTTCCCTCCTCCTTTCCTCTCTTTCTCCCCTCTC
CCTTTTTTTCCCTCTTTTCTCTTTTTTTCTTCTCTCTCCTTCTCCTTTCT
TCCCCCTCTTTTTCCCCCTCTTCTCTTTTTTTTCCCCCCTTTCCTTTTTT
CCCTTTTTTTTTCCTCTTCTTTTTTTTTTTTCTTTTCCTCTTCTTCTTCC
CCCCCTCCNTTTTCTCCCCCTTTCTTCTCCTCTCCCCCCCCTCCTTTTTT
TTTTCTCN
ATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAGGGACTAGTGTAAACATGGAGGC
AATTCGGATGGACCTCCTTGGTTCTGTTGCCAAGTGATGTCTGATGTCTG
ACAACACCGCCAAGTACCAAAGCCCATGTGGCACCACCACTGTGAACTCC
AGTGCAGGTGCTTGGAATTCTGACCCAACATAAGGAAGGCTATCTATAGA
AAGGTCCAGGTAGCAAAGAGAGACACAAGAACAGCTCTGTGGACTTTTCT
TCAGACTTATTGTGTGGCTAGCTACAGATATACAGTGGGTCCCAACCACA
TCTCATTTCTATCCTTCTCTCATAAAAGCTGAGATTGCATGGATACACAG
AGTGTGGGATGAATCTCACACAGGCAGGACCCAAGGATTCTCTTCCTGTA
GCTCAGAGGCCTTAACAGCAGGCACCATTGCTTCCTCTTGTTATAATTTA
AAGCAGAGGTCTGTGGCTTCTATGGGGGCAGTCAGCATGAGGAATAGAGA
AAAATTACNTAATTCCATTGCCATTTCAGGCAAGAGTGATTTATGATTAA
GCACCACAGATTTTATACTTTTACCCAGACTTTCCACAAAATAAACTTAC
GGCATACTTTATTTTTCCCTTTCTTATTCCCCAACATAATGAATTTCCCC
ACCATTTTTGCGCCATTCTCCCTTACCCCTTCCCTCTCCTTTACCCGATT
TTGTTTTCCCTTTTCTTACCCATATTTTTTTCCACCAACTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_c17.g1 MSMg01no395_c17.g1 CHROMAT_FILE:
MSMg01no395_c17.g1 PHD_FILE: MSMg01no395_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:55 2005
         (428 letters)



>mm_chr1_46990267_46991094
          Length = 828

 Score =  812 bits (420), Expect = 0.0
 Identities = 426/428 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagggactagtgtaaacatggaggcaattcggatggacctccttggttctgttgccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atagggactagtgtaaacatggaggcaattcggatggacctccttggttctgttgccaag 569

                                                                       
Query: 61  tgatgtctgatgtctgacaacaccgccaagtaccaaagcccatgtggcaccaccactgtg 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 568 tgatgtctgatgtctgacaacactgccaagtaccaaagcccatgtggcaccaccactgtg 509

                                                                       
Query: 121 aactccagtgcaggtgcttggaattctgacccaacataaggaaggctatctatagaaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aactccagtgcaggtgcttggaattctgacccaacataaggaaggctatctatagaaagg 449

                                                                       
Query: 181 tccaggtagcaaagagagacacaagaacagctctgtggacttttcttcagacttattgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tccaggtagcaaagagagacacaagaacagctctgtggacttttcttcagacttattgtg 389

                                                                       
Query: 241 tggctagctacagatatacagtgggtcccaaccacatctcatttctatccttctctcata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tggctagctacagatatacagtgggtcccaaccacatctcatttctatccttctctcata 329

                                                                       
Query: 301 aaagctgagattgcatggatacacagagtgtgggatgaatctcacacaggcaggacccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 328 aaagctgagattgcatggatacacagagtgtgggatgaatctcacacagacaggacccaa 269

                                                                       
Query: 361 ggattctcttcctgtagctcagaggccttaacagcaggcaccattgcttcctcttgttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggattctcttcctgtagctcagaggccttaacagcaggcaccattgcttcctcttgttat 209

                   
Query: 421 aatttaaa 428
           ||||||||
Sbjct: 208 aatttaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)