NCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGN
GGAATTCTTTGTTTCCTAGTATTATTTGAATAGTTTTTTTCCTTTCCATA
TATACCTCTAATGTGTAAACCTAGCCCCTGAAAGGGTGGCAGCAATATTT
CCACTGGTCTTAAATTTGTGTCACAGTGTACCTGTATTTTTTTGTAATTC
AATTTACATCCTGATTGAAGCCCTATCCTCCCCTCCTAGTCTCTCCACAT
ATCATCCCTTGCCATGTCCCCTCTATCCCTTCTCCTCTGAAAAGGGTGAA
AGCCTCCTGGGTGCCATTCTACTTGAGCACATAAAGTTACTTCAGGACTA
GGCACATCCTCTCTCACCGAGGCCAGACAAGGCAGCCCAGTTAAGTGAAA
CAGGATCCACAAGCAGGCAAAAAAGTCAAGGATAGCCCCTATTTAAGTTT
TTGGGGTTCCTCATGAAGACAGATAATATACATGCATAGCAGTAAAAACC
TGATCTAACATAATAATAATATATGATTACTGTCATGGTTTGAATATACT
TGGCCCAGGGAGTGGGACTATTGGGAGGTATGTCCTTGTTGGAATAGGGC
GAATTGGAAAAATGCGCCACTGTTTGGATGCCCTTTTCTATCCTTTTCTT
ATTCCTTTTCTCCCCCCTTTTTATCCCTCATCCCTCTTATTACCCTTTGC
CCTATTTAATTCCCTTCCCCTTTCCTTTCAATCACTCGTATTTTCTATTT
ATT

NCCGATGATATGGGAAGCCTGGCGGCCGCCTGGTTCATAATTTTAGGTGA
ACTATAGAAGTACAACAGAAATTCTCTCTTGTGATTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGCCGNNCNNNCCCCNCCCCCCCCCCTCCCCCCC
CCCCCTTTTTCTCCGGCGCGGCCTCTTCCCCCCCCCTTCTCCTCTCCCTT
CTTCCCTTCTTCCCCCCCTTCTTCCCCCGTCTCCGCGCCCCTTTTTTTTT
NCCGTCGCTNGCGCCCCCCCTTCATCCTTCGCCGCGCGCGTCCCCCCCGC
CGCTCTCCCCCTCGCCTTCCCAAACGCCGCCCCCCCCCCCCCGGCCGGGT
TTTTTTTCCTCCCCCCCCCCCCTGTATTCGGCTCTCCCTTCTCCTTCCCT
CCCATATAACCCCACCCATTTTATTTTTCCATAATCCCTTCGCAACATAC
AAAACAAATTAAAACCATTACACCTACTCAAAACATAAAATCAAAACAAA
AAATCCACAATATATTTAACACAAACCCCCTCCCATATTCCCCATATTAT
ATCACATCTACCCCAATACATAAACATCCCCCACCCTATTTACCCCTACA
CATCCCCCACTATCCACAATTCACCATAACACCACCACCTACAAAAATAA
AAATTAACACCATCCAATCAACTACCCCAAAAAAATGAACCATTCTTTTT
TTTTTAACTAAAAAGCTCTAGAACCAAAAAAAACCCGATATTTTTACTTT
AACCATATAATTACATTAAACATAGATCACAACACTACACAACCAATCAT
AAACATACAACCATCTTTTATCCACATACCTTG

Query= MSMg01no395_g12.b1 MSMg01no395_g12.b1 CHROMAT_FILE:
MSMg01no395_g12.b1 PHD_FILE: MSMg01no395_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:15 2005
         (485 letters)



>mm_chr1_142041468_142042355
          Length = 888

 Score =  791 bits (409), Expect = 0.0
 Identities = 468/489 (95%), Gaps = 4/489 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attatttgaatagttttttt---cctttccatatatacctctaatgtgtaaacctagccc 57
           ||||||||||||||||||||   ||||||||||||||||||||||| |||||||||||||
Sbjct: 201 attatttgaatagttttttttttcctttccatatatacctctaatgggtaaacctagccc 260

                                                                       
Query: 58  ctgaaagggtggcagcaatatttccactggtcttaaatttgtgtcacagtgtacctgtat 117
           ||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 261 ctgaaggggtggcagcaatatttctattggtcttaaatttgtgtcacagtgtacctgtat 320

                                                                       
Query: 118 ttttttgtaattcaatttacatcctgattgaagccctatcctcccctcctagtctctcca 177
           ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ttttttgtaattcaatttatatcctgattgaagccctatcctctcctcctagtctctcca 380

                                                                       
Query: 178 catatcatcccttgccatgtcccctctatcccttctcctctgaaaagggtgaaagcctcc 237
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cataccatcccttgccatgtcccctctatcccttctcctctgaaaagggtgaaagcctcc 440

                                                                       
Query: 238 tgggtgccattctacttgagcacataaagttacttcaggactaggcacatcctctctcac 297
           ||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggatgccagcctacttgagcacataaagttacttcaggactaggcacatcctctctcac 500

                                                                       
Query: 298 cgaggccagacaaggcagcccagttaagtgaaacaggatccacaagcaggcaaaaaagtc 357
           |||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct: 501 cgaggccagacaaggcagcccagttaagtggatcaggatccacaagcaggcaacaaagtc 560

                                                                       
Query: 358 aaggatagcccctatttaagtttttggggttcctcatgaagacagataatatacatgcat 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggatagcccctatttaagtttttggggttcctcatgaagacagataatatacatgcat 620

                                                                       
Query: 418 agcagtaaaaacctgatctaacataataataata-tatgattactgtcatggtttgaata 476
           || |||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||
Sbjct: 621 agtagtaaaaacctgatctaaaataataataataatatgcttactgtcatggtttgaata 680

                    
Query: 477 tacttggcc 485
           | |||||||
Sbjct: 681 tgcttggcc 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 888
Length adjustment: 10
Effective length of query: 475
Effective length of database: 878
Effective search space:   417050
Effective search space used:   417050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)