BAC Information

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BAC

Clone NameMSMg01-395L05
Chromosome1 (Build37)
Map Location 156,577,295 - 156,577,778
singlet/doubletsinglet
Overlap genenone
Upstream geneRgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6, Lhx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395L05.T7 (MSMg01no395_l05.b1)MSMg01-395L05.TJ (MSMg01no395_l05.g1)
ACCAG496455AG496456
length799777
length of high quality
(start - end)
322 (77 - 398)484 (78 - 561)
definitionCHROMAT_FILE: MSMg01no395_l05.b1 PHD_FILE: MSMg01no395_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:37 2005CHROMAT_FILE: MSMg01no395_l05.g1 PHD_FILE: MSMg01no395_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCGTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAACCCTCTGCAAGGAGTTCAGTGGTCTTCCTCACAATTCGGT
AGCTGGGTATTAGGAGCAAGTCCCTCAGGGGAGCAAAGCAGAAGCAGATG
GCGTTCTTGTGACATCACCTCGTGAGTCATGAAGCCTCACATCTGCTCTG
CACACATCCAGTCTCGAAATGAGAAAACACAAGAGACTGTGCTGGAGGAG
GGCCCACACACACTGTAAAGAAGTGCGAGTAATGGGAGATCCTATTGTGG
TCATCTTTGGAAAATTCTCGTATGTGTGTATGTGTGTGTCTCTGTGTGTG
TGTCTCTGTGTGTGCATGTGTGTGTATGTGTGTGTGTGTATGTGTGCATG
TGTGCGCATGTGTGTTCGCCCCCCCCCTATTCTTCTTTTATCTTTTTCAC
CCCTTTTTTTTCTTTTCCTTTCCCTCTCAATTTTTTAACCCTCTTTCCTC
CACCTCTTCCTCTTTATCCCCATTTTTTTTTATCTTCCCGTTATATATTT
CTTTTTTCCTACACCTCCTCTTCTCCTCCCCCTTTTATCCCCTTTTTTTT
TTTTTTTTTTCACCCCTCTTTTTTTTTATTCCATTTTTTCTTTCTTCTCC
TCCAACTCCAATTACCCCAATTTATTTCTTATTTTTCTAAATCCCTACAA
TTTATCTTTCTATTCATTTTTTCCCCTCTTCCCTCTTTTTTTTTTTTTTC
TATAATTATCTCTTCTCCCCATATTACTTTATCTTTTATTTTTCTCACC
CCTCGATGCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATAGGAGCAGAGGAAGCCACTG
AAAAACTTTCCCAGATTATTGAACATATACAGATTATTACATTTCAGAAT
CCTTTTTCCTGTATCCCTGATACTCCTGTGAACAATTCAACTGTCAGACA
AGATCGAGGAAGACTGACAGGAGTATTTTCAGCCTCGTATGTAAGAGAAG
GGAGGCAAAGCCATTTCAGTATCCCCAGACCAGGCAGGCCGTGGAGCACA
TGCCAAGGCATACAGAGTGGTGAGTTGAGAATCTACCCCATTCATTCACA
AAGATCTTTCCAGACCTCACAGGCTTTGGGCCCTCTTCATATAAGATTTT
AGCCACTCATTGAGGAATCTGAAAATCTGGGCCTTGGCTGAAGACATGTT
CCCCTCCCACCAATCCTGATCACTCTGCCTTGCCAATTACACTCGGGTGG
CTTGTGCTTANACTATCAGAGGCCCCTTTGTTCTATTTTCTCCTTATTGA
GCTTTTCCAAGATATAGACTCTTATGTCAAACAGTGCTCTTAAGAACATA
ATGCATAGAGGGTTTTGTGAGTGGGTTCCCCAAAACCAAGTTTGGTATGA
AACCCTGTGTTAATTGCCCAGCGTAACCTAACAAACTGGTATGGAAAATG
CCTAATTTTCCGGTAGGTTGGCTGGGACTTATCAGTCACCGCCATATTCC
TTTGATTCTTGCGGGAATAAAGGAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_l05.g1 MSMg01no395_l05.g1 CHROMAT_FILE:
MSMg01no395_l05.g1 PHD_FILE: MSMg01no395_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:37 2005
         (484 letters)



>mm_chr1_156577095_156577978
          Length = 884

 Score =  930 bits (481), Expect = 0.0
 Identities = 483/484 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataggagcagaggaagccactgaaaaactttcccagattattgaacatatacagattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataggagcagaggaagccactgaaaaactttcccagattattgaacatatacagattat 260

                                                                       
Query: 61  tacatttcagaatcctttttcctgtatccctgatactcctgtgaacaattcaactgtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacatttcagaatcctttttcctgtatccctgatactcctgtgaacaattcaactgtcag 320

                                                                       
Query: 121 acaagatcgaggaagactgacaggagtattttcagcctcgtatgtaagagaagggaggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaagatcgaggaagactgacaggagtattttcagcctcgtatgtaagagaagggaggca 380

                                                                       
Query: 181 aagccatttcagtatccccagaccaggcaggccgtggagcacatgccaaggcatacagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagccatttcagtatccccagaccaggcaggccgtggagcacatgccaaggcatacagag 440

                                                                       
Query: 241 tggtgagttgagaatctaccccattcattcacaaagatctttccagacctcacaggcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtgagttgagaatctaccccattcattcacaaagatctttccagacctcacaggcttt 500

                                                                       
Query: 301 gggccctcttcatataagattttagccactcattgaggaatctgaaaatctgggccttgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggccctcttcatataagattttagccactcattgaggaatctgaaaatctgggccttgg 560

                                                                       
Query: 361 ctgaagacatgttcccctcccaccaatcctgatcactctgccttgccaattacactcggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaagacatgttcccctcccaccaatcctgatcactctgccttgccaattacactcggg 620

                                                                       
Query: 421 tggcttgtgcttanactatcagaggcccctttgttctattttctccttattgagcttttc 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggcttgtgcttaaactatcagaggcccctttgttctattttctccttattgagcttttc 680

               
Query: 481 caag 484
           ||||
Sbjct: 681 caag 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)