BAC Information

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BAC

Clone NameMSMg01-395P24
Chromosome1 (Build37)
Map Location 176,429,221 - 176,429,660
singlet/doubletsinglet
Overlap geneFmn2
Upstream geneBC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220
Downstream geneGrem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395P24.T7 (MSMg01no395_p24.b1)MSMg01-395P24.TJ (MSMg01no395_p24.g1)
ACCAG496682AG496683
length851795
length of high quality
(start - end)
---440 (77 - 516)
definitionCHROMAT_FILE: MSMg01no395_p24.b1 PHD_FILE: MSMg01no395_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:01 2005CHROMAT_FILE: MSMg01no395_p24.g1 PHD_FILE: MSMg01no395_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTCCATCCGCGGN
ATTCCCGGACCGTACCTCTACAAAGAGAAACCCTATCTTGAAAAAGACTA
GACCGGGGGTCCATATGTTCCCAACCCCCGAGGGGTTTCCCTTTTTCTCC
TCCCCCCCTTCCTCCCTCTTTTTTTTTCCCTTCTTTTTTTCTTCCTTTCC
CCCCCCTCTTTTTCTTTTCTCCCCCTTTCCCCTCCCCCCCCCCCCTTTTT
TTTCCTTCTTTTTTTCCCCCCCCCCCTTTTTTCCCCCTTCCTTCTCCCCC
CCCTTTTTTCCCCCCCTTTCCCTTTTTTTTTTTCCCCCCCCCTTTCTCCC
TTTTTTTTCCTCCCTTTTCTCCCCCCCTCTTTCCTTCTCTTCTCTCTTCT
TCCCCCCCTCTATTTATCTTTTTTCCCCCCTCCCCCCCCCCCCTCCTTTT
TCCTTTTCTTTTCCCCCCCCTCTTCTTTTCCCCTTTTTCTTTTTTTCCTC
CCCCCCCCCTCCTTTTTTTCCCTCTTTCTTTCCCCCTTTTTCCCTCTTTT
CCTCCCCCCTCCCTTCCCCTCTTTTCTCCCCCTCCTCCCCTTCTTCTCCC
CTTTCCTCCTCTTTTCTCCTTTTTCTTCTCTCCCCCCCTCTCCCCTTTTC
CCCCCCCTATCTCCCTCTCTTCCCCTTTTTTCCCCCCCTTTTTCCTTTCC
CCTCCCCCTCTCCCTTTTTCTCTCCTTCTCCCCCCCCCCCTTTCTTTTCC
GTCTCCCCTTTTTTCCTCTTTTTCCCCCTCCTCCCCTCTTTTTCTCCTCT
CTTTCTTTCCTCCCTCCTCCTTACTCTTTTTTCCTTGTTCTTTCTCCCCG
C
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCTGTAGACCAGGCTGGCCTCT
AATTTATAGAGATCTGCCTGCCTCTGCCTCCCAAGTGCTGCATTGAAGGC
TTAAAAGCATGTGCCACCACTGCCAGGCTAAGAATTCTGTTTCTTTAAAT
GAAGTTATAGGATAGTTTCATGAGGTGTACTGCTTAGGTTTAGTGACAGA
ACAGCAGCATTGAGAATATAAAACTCAAAGATCAGAACAGTGTGGCCCCA
TGCAAACATAGCTTTGTTTTGTTTCTTTGTTGTTTGTTTCTTTTGACATG
TTTTCAAGTAACTTTGTTTGAAATATCTCTTAGAAAAGAGAATGTTGGGA
ATGGAGAGACTTCAGCAGGCTGGACTTCTGCAGAATGAAATACTCTTTGC
ACTTACATGCAAAGGAAGGAAGGAAGGAAGGACGGAAGGAAGAAAAGAAA
GAAAGAAAGAAAGAAAGATAGAAAGATAGACAGAAAGAAAGATAGATAGA
CAGTAAGAAAGAAAGAAAGAATGAAAGATAGAAAGAAAGAAAGAAAGTCT
TCTCTGTAAGCAATCTCTATGTCCCTTCCTCCCTATCATAAATAGCAACC
CCAACCCTCCTATAAAAACCCTTTTTCTTTTTTCCCCCCCTTTTTAAAAA
TTACCTATTCAATAATTAATTAATTAATTAACTTATTCCCCAAAAACGCA
TTATTGTTCCCACGTCGGGCCTTTGGGCCCTAATAAAAAATAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_p24.g1 MSMg01no395_p24.g1 CHROMAT_FILE:
MSMg01no395_p24.g1 PHD_FILE: MSMg01no395_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:01 2005
         (440 letters)



>mm_chr1_176429043_176429882
          Length = 840

 Score =  851 bits (440), Expect = 0.0
 Identities = 440/440 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctgtagaccaggctggcctctaatttatagagatctgcctgcctctgcctcccaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 attctgtagaccaggctggcctctaatttatagagatctgcctgcctctgcctcccaagt 559

                                                                       
Query: 61  gctgcattgaaggcttaaaagcatgtgccaccactgccaggctaagaattctgtttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gctgcattgaaggcttaaaagcatgtgccaccactgccaggctaagaattctgtttcttt 499

                                                                       
Query: 121 aaatgaagttataggatagtttcatgaggtgtactgcttaggtttagtgacagaacagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aaatgaagttataggatagtttcatgaggtgtactgcttaggtttagtgacagaacagca 439

                                                                       
Query: 181 gcattgagaatataaaactcaaagatcagaacagtgtggccccatgcaaacatagctttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gcattgagaatataaaactcaaagatcagaacagtgtggccccatgcaaacatagctttg 379

                                                                       
Query: 241 ttttgtttctttgttgtttgtttcttttgacatgttttcaagtaactttgtttgaaatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttttgtttctttgttgtttgtttcttttgacatgttttcaagtaactttgtttgaaatat 319

                                                                       
Query: 301 ctcttagaaaagagaatgttgggaatggagagacttcagcaggctggacttctgcagaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctcttagaaaagagaatgttgggaatggagagacttcagcaggctggacttctgcagaat 259

                                                                       
Query: 361 gaaatactctttgcacttacatgcaaaggaaggaaggaaggaaggacggaaggaagaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gaaatactctttgcacttacatgcaaaggaaggaaggaaggaaggacggaaggaagaaaa 199

                               
Query: 421 gaaagaaagaaagaaagaaa 440
           ||||||||||||||||||||
Sbjct: 198 gaaagaaagaaagaaagaaa 179


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)