BAC Information

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BAC

Clone NameMSMg01-396B09
Chromosome1 (Build37)
Map Location 46,427,817 - 46,456,803
singlet/doubletdoublet
Overlap geneDnahc7b
Upstream geneCol5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225
Downstream geneLOC666855, Slc39a10, EG227061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396B09.T7 (MSMg01no396_b09.b1)MSMg01-396B09.TJ (MSMg01no396_b09.g1)
ACCAG496748AG496749
length778760
length of high quality
(start - end)		482 (34 - 515)403 (66 - 468)
definitionCHROMAT_FILE: MSMg01no396_b09.b1 PHD_FILE: MSMg01no396_b09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:08 2005CHROMAT_FILE: MSMg01no396_b09.g1 PHD_FILE: MSMg01no396_b09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:08 2005
singlet/doubletdoubletdoublet
BLAST hitpluralplural
Map location.(46,427,817 - 46,428,292)(46,456,401 - 46,456,803)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCACTTT
CCGCTGTGTATTACAGTACAATGTTACAATGTCCTTGTAGCTTCTTTGAT
TCTAGTTAAGTTTTGGCAGAGCACATACTTTCAAGAGTGTCAGACCTTCT
GTCTATGGATTGCCCATGAGAGGGACATTAACAGTTTGGCATTAATGCAG
TAGGTAGCAGAGTGATAGAGTGCTCCCTATATAGCTCCTCTGGTAATGGG
AATACTGGTTTTCATCCATTGCTGGGGCTTTTCAAGTACTGTTGATACTG
GCTGTTATTTGAATGGGCTCTAGTCTTGGCTGCTCAACAACAGTGAAGGG
TCTATGCACTCTTTTGATTATTCACACTCTACAAGTACAGTTGCTTCACA
GGGAGCAACAGGAGTCAGAATTCCTCCCACCCCCTGTAATACTCACCTTT
CTTTGTGAGCAGTTTGTGACCACATAAATGTGAGGCAACTGATGCAGGGG
CCCAGGACAGGTGCAGTGGGGTAGTTTATTTTTTTGCTACTACTTTGGGT
ATGTCTACCCCGTAACTATCTACTACTACACGTTAGGCCCCTTGCCTGTG
GTTTCCTGCGGAAAAAATGATAGTATTCTTTGGCTTCCTGGAAGCTTTCC
TTCCCAACGGTCCCTTGCCAAGAAAATGGAATACACTTTTGGTTATTGGT
AACAAATAAAATAGGGGGGGGCACTCACTAATCCTTTTATTGTCCCGGGC
TTTTTCCTTTTTCCATCCTATTCTCCCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTCCGAAATTAGTGGTTTGTCTTGAAATGACAGCA
ATTGCAAGAACTGTGGCCAAAGATCCATTGCTTGCCTGCTTCATGGGAAT
AGCCTCGGCCTCAGGAAAACATGGTGCAGGAAATTTTATGGCACAAAAAA
ATGTTTTCAAGGACTTATGAGCCTCTCTTTCACAGATACGTGAAGCAAGA
AAAACAGTAAGAAAACAAAACTGGTCTTTGATCAGGATTTTCCAGATCTT
GGAAAATGGATGGGGTGTTCCAACTCCACAAAGTGTTGTTTTTGAACAAG
GAAATGTACCTCAGTTTTCCAAGCTGCCCTCCAAGAAGCAGCTTAAACAC
TTGAAGAAATGCAGTCCAAGATAAATGGCTACGGAGGAAAGATGACTTTA
ATTTCCTGACTTTATTTTAAGAGATATAATATAGTGTCATGAAACACCAT
CTCAGACTTCCCAAACATCGCAGATGGTTAAAGCAATCTACTATTTTTGT
TTTTACANTCCTATGCCCTTGCTGAAAGAATTTCCCCCTTTCACTAAATA
GCTGGTCATAAAAAAATCTTGTTCCCCCCAAAAATTGCAAATTTGAAAAA
TAGTCCCTTCCTTGGCAAGCGTGATTATTCTGTCATATTTCCCCGTCTTT
CTTCTCTTCTCGTCGTCTCGGGGAATTCTTCCCTATCCCTTTTTATTTTA
AATTTTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_b09.b1 MSMg01no396_b09.b1 CHROMAT_FILE:
MSMg01no396_b09.b1 PHD_FILE: MSMg01no396_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:08 2005
         (482 letters)



>mm_chr1_46427611_46428492
          Length = 882

 Score =  897 bits (464), Expect = 0.0
 Identities = 473/476 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcactttccgctgtgtattacagtacaatgttacaatgtccttgtagcttctttga 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcactttccgctgtgtattacagtacaatgttacaatgtccttgtagcttctttga 266

                                                                       
Query: 67  ttctagttaagttttggcagagcacatactttcaagagtgtcagaccttctgtctatgga 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttctagttaagttttggcagagcacatactttcaagagtgtcagaccttctgtctatgga 326

                                                                       
Query: 127 ttgcccatgagagggacattaacagtttggcattaatgcagtaggtagcagagtgataga 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttgcccatgagagggacattaacagtttggcattaatgcagtaggtagcagagtgataga 386

                                                                       
Query: 187 gtgctccctatatagctcctctggtaatgggaatactggttttcatccattgctggggct 246
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 387 gtgctccctatatagctcctctggtaatgggaatactggttttcatccattggtggggct 446

                                                                       
Query: 247 tttcaagtactgttgatactggctgttatttgaatgggctctagtcttggctgctcaaca 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tttcaagtactgttgatactggctgttatttgaatgggctctagtcttggctgctcaaca 506

                                                                       
Query: 307 acagtgaagggtctatgcactcttttgattattcacactctacaagtacagttgcttcac 366
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 507 acagtgaagggtctatgcactcttttgattagacacactctacaagtacagttgcttcac 566

                                                                       
Query: 367 agggagcaacaggagtcagaattcctcccaccccctgtaatactcacctttctttgtgag 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agggagcaacaggagtcagaattcctcccaccccctgtaatactcacctttctttgtgag 626

                                                                   
Query: 427 cagtttgtgaccacataaatgtgaggcaactgatgcaggggcccaggacaggtgca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cagtttgtgaccacataaatgtgaggcaactgatgcaggggcccaggacaggtgca 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no396_b09.g1 MSMg01no396_b09.g1 CHROMAT_FILE:
MSMg01no396_b09.g1 PHD_FILE: MSMg01no396_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:08 2005
         (403 letters)



>mm_chr1_46456201_46457003
          Length = 803

 Score =  733 bits (379), Expect = 0.0
 Identities = 397/403 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccgaaattagtggtttgtcttgaaatgacagcaattgcaagaactgtggccaaagatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ctccgaaattagtggtttgtcttgaaatgacagcaattgcaagaactgtggccaaagatc 544

                                                                       
Query: 61  cattgcttgcctgcttcatgggaatagcctcggcctcaggaaaacatggtgcaggaaatt 120
           || ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 543 cactgcttgcctgcttcatgagaatagcctcagcctcaggaaaacatggtgcaggaaatt 484

                                                                       
Query: 121 ttatggcacaaaaaaatgttttcaaggacttatgagcctctctttcacagatacgtgaag 180
           ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 483 ttatggcacaaaaaaatattttcaaggacttatgagcctctctttcaaagatacgtgaag 424

                                                                       
Query: 181 caagaaaaacagtaagaaaacaaaactggtctttgatcaggattttccagatcttggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 caagaaaaacagtaagaaaacaaaactggtctttgatcaggattttccagatcttggaaa 364

                                                                       
Query: 241 atggatggggtgttccaactccacaaagtgttgtttttgaacaaggaaatgtacctcagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 atggatggggtgttccaactccacaaagtgttgtttttgaacaaggaaatgtacctcagt 304

                                                                       
Query: 301 tttccaagctgccctccaagaagcagcttaaacacttgaagaaatgcagtccaagataaa 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tttccaagctgccccccaagaagcagcttaaacacttgaagaaatgcagtccaagataaa 244

                                                      
Query: 361 tggctacggaggaaagatgactttaatttcctgactttatttt 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tggctacggaggaaagatgactttaatttcctgactttatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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