BAC Information

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BAC

Clone NameMSMg01-396C22
Chromosome1 (Build37)
Map Location 158,625,546 - 158,719,191
singlet/doubletdoublet
Overlap geneC530043G21Rik, LOC433368
Upstream geneQscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a
Downstream geneRalgps2, Angptl1, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396C22.T7 (MSMg01no396_c22.b1)MSMg01-396C22.TJ (MSMg01no396_c22.g1)
ACCAG496822AG496823
length792760
length of high quality
(start - end)		426 (36 - 461)496 (62 - 557)
definitionCHROMAT_FILE: MSMg01no396_c22.b1 PHD_FILE: MSMg01no396_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:15 2005CHROMAT_FILE: MSMg01no396_c22.g1 PHD_FILE: MSMg01no396_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(158,718,793 - 158,719,191)(158,625,546 - 158,626,022)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTAG
AGAGCCACACAGTTTAAGTAGATGTTTATTTAGCAGAACAAAGCAAGCTC
TCCGAACAGAAGTTGGAGTGGGCTATGACACAAGGTGGGACACTGTGTTC
TTTGTTGTGGGTTTTAAAGGAACTTTGATAAATTTTAATGAGATGGATAT
CATATTCATGGGGTAAGGTGATTTTCTCCCCTTTTAGTCTTGGTAGACTA
GATTCACTTGTAGAGAATCCCTTCCCATGATCCCCTAGAAAGGGCCACAT
AGCCTTAGTGTACATATACGGCAAAATACCCAGGGCACTTTCACTTTTGG
CAGAGCAGGGACAACTGATCTACAGCCTCAAGGCTGTTTAACCACTAAGA
GTGTCCTGGCTGTCAGGAGATGCAGCCACCAAGACACAGCTGGGCTTTTC
TTGATTAGCTCAAATCAAACTCCTTGTTGAGACAACTCAGGGTCCCGTGT
GGATCTCATGGTTATCAGGCGAGCAACCTGAGACTGTCCTGAAAGCTGTA
AGCCAGGTTTTACAGCAGACTTGGTGGGCTGCCCAAACAGCAGGAACCTG
GGNTGTTCCCCCGGAATGGCTTCCCCAGTCCCCAGGTCAAAAACAATCCT
CTGGTCAAAATCCCCCGGGGGGAAGGGGACCCCGTTTACCTCCTTAAAAT
CCCCTGAGGCTTGGCCCGCGGGATTAAACTTTATTCTCTTTAATGGCGGG
GATTTCCTCTTATTCCTCTCCCACGCGGGGTGTGGAGGAGAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCAGGACAGCCAGGGCTATACAGAGAAACCCCGTCTCAAA
AAAACAAACAAACAAAAATAAATCAATAAAAATAAAAATAAAAAAAGAAA
TATGAATCTATGCTGTAGATTGCATGAAATGGTAGAACTAAACATAAATA
TATATTTACATTCATACAAAAAGGAAATCAGTTATTAAGAGAGGTTATTG
GTCGGCTAAGTAGAAAGAATAAGATGCAAAAGTATGTATAGTGTAACAGT
ATTTAGAATGGTAGAGTTAAATATAAACATGTATGTATACAAAAACAAAT
AAATTACTAATAGAGGAACTGGAATGTGTTACTGCAGTTCTTTTGATAAT
TGAAGCATGTTAACAAATTCATGAATTACTGATTCAAAGATTAAAACACA
CAAAACAAAACAAAACAAAACAAAGCCATTATACAACTTATGGGGTAAAC
CCCAAACACTTGGGTTTGATACATAAGAATCTTACTTAGATAAAGAAGTA
TGATACATTAGCTAAGAGTTTGTGGTTTACTCAAATTTCTGGAGTTAAAA
TACAAATGGGGGAGTTGGGCTGGAGATTTAACCAGAGACTTGTGCATAGG
CAGCAATTGCTCTACCACTGCTCATATCCCCAGCCCCTAGAAATTAGGTC
AGGAGACGGTGGAACTTCCCCGAAGCTCCTTCCTCCCCCGGAATGTGGAA
ATAAAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_c22.b1 MSMg01no396_c22.b1 CHROMAT_FILE:
MSMg01no396_c22.b1 PHD_FILE: MSMg01no396_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:15 2005
         (426 letters)



>mm_chr1_158718693_158719519
          Length = 827

 Score =  659 bits (341), Expect = 0.0
 Identities = 390/419 (93%), Gaps = 21/419 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtagagagccacacagtttaagtagatgtttatttagcagaacaaagcaagct 64
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 499 gaattcagtagagagccacacagtttaaatagatgtttatttagcagaacaaagcaagct 440

                                                                       
Query: 65  ctccgaacagaagttggagtgggctatgacacaaggtgggacactgtgttctttgttgtg 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 439 ctccgaacagaagttggagtgggctatgacacagggtgggacactgtgttctttgttgtg 380

                                                                       
Query: 125 ggttttaaaggaactttgataaattttaatgagatggatatcatattcatggggtaaggt 184
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 379 ggttttaaaggaactttgataaattttaatgagctggatatcatattcatggggtaaagt 320

                                                                       
Query: 185 gattttctcccctttta-gtcttggtagactagattcacttgtagagaatcccttcccat 243
           || |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gactttctccccttttaagtcatggtagactagattcacttgtagagaatcccttcccat 260

                                                                       
Query: 244 gatcccctagaaagggccacatagccttagtgtacatatacggcaaaatacccagggcac 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 259 gatcccctagaaagggccacatagccttagtgtacatatacggcaaaatacccag----- 205

                                                                       
Query: 304 tttcacttttggcagagcagggacaactgatctacagcctcaaggctgtttaaccactaa 363
                          ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 204 ---------------agcagggacaagtgatctacagcctcaaggctgtttaaccactaa 160

                                                                      
Query: 364 gagtgtcctggctgtcaggagatgcagccaccaagacacagctgggcttttcttgatta 422
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gagtgtcctggctgtcgggagatgcagccaccaagacacagctgggcttttcttgatta 101


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 827
Length adjustment: 9
Effective length of query: 417
Effective length of database: 818
Effective search space:   341106
Effective search space used:   341106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no396_c22.g1 MSMg01no396_c22.g1 CHROMAT_FILE:
MSMg01no396_c22.g1 PHD_FILE: MSMg01no396_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:15 2005
         (496 letters)



>mm_chr1_158625341_158626231
          Length = 891

 Score =  725 bits (375), Expect = 0.0
 Identities = 458/503 (91%), Gaps = 33/503 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggctatacagagaaaccccgtctc-aaaaaaacaaacaaacaaaaata 59
           ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 206 caggacagccagggctacacagagaaaccctgtctcaaaaaaaacaaacaaacaaaaata 265

                                                                       
Query: 60  aatcaataaaaataaaaat-----aaaaaaagaaatatgaatctatgctgtagattgcat 114
           ||| |||  ||||||||||     ||||||||||||||||||||||||||||||||||||
Sbjct: 266 aataaat--aaataaaaattaaaaaaaaaaagaaatatgaatctatgctgtagattgcat 323

                                                                       
Query: 115 gaaatggtagaactaaacataaatatatatttacattcatacaaaaaggaaatcagttat 174
           |||||||||||||||         ||||||||||||||||||||||||||||||| ||||
Sbjct: 324 gaaatggtagaacta---------atatatttacattcatacaaaaaggaaatcaattat 374

                                                                       
Query: 175 taagagaggttattggtcggctaagtagaaagaataagatgcaaaagtatgtatagtgta 234
           |||     |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 taa-----gttattggtcagctaagtagaaagaataagatgcaaaagtatgtatagtgta 429

                                                                       
Query: 235 acagtatttagaatggtagagttaaatataaacatgtatgtatacaaaaacaaataaatt 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 acagtatttagaatggtagagttaaatataaacatgtatgtatacaaaaacaaataaatt 489

                                                                       
Query: 295 actaatagaggaactggaatgtgttactgcagttcttttgataattgaagcatgttaaca 354
           | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 490 attaatagaggaactggaatgtgttactgcagttcttttgataactgaagcatgttaaca 549

                                                                       
Query: 355 aattcatgaattactgattcaaagattaaaacacacaaaacaaaacaaaacaaaacaaag 414
           |||| |||||||||||||||||||||||||||||||||||||||||||| |||       
Sbjct: 550 aattgatgaattactgattcaaagattaaaacacacaaaacaaaacaaagcaa------- 602

                                                                       
Query: 415 ccattatacaacttatggggtaaa-ccccaaacacttgggtttgatacataagaatctta 473
              |||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 603 ---ttatacaatttatggggtaaaaccccaaacacttgggtttggtacataagaatctta 659

                                  
Query: 474 cttagataaagaagtatgataca 496
           |||| ||||||||||||||||||
Sbjct: 660 cttaaataaagaagtatgataca 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 891
Length adjustment: 10
Effective length of query: 486
Effective length of database: 881
Effective search space:   428166
Effective search space used:   428166
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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