BAC Information

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BAC

Clone NameMSMg01-396F23
Chromosome1 (Build37)
Map Location 60,913,386 - 60,913,800
singlet/doubletsinglet
Overlap genenone
Upstream geneBmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555
Downstream geneRpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566, Pard3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396F23.T7 (MSMg01no396_f23.b1)MSMg01-396F23.TJ (MSMg01no396_f23.g1)
ACCAG496966AG496967
length783760
length of high quality
(start - end)		418 (61 - 478)470 (64 - 533)
definitionCHROMAT_FILE: MSMg01no396_f23.b1 PHD_FILE: MSMg01no396_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:29 2005CHROMAT_FILE: MSMg01no396_f23.g1 PHD_FILE: MSMg01no396_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGGCGCTATACGACTCACTATATTTCTAGGATCCGCGGAATTCTCCTG
GGGTTCTCTGGGAACCAGTGTGGACACCTCTCCCACCCCCAACTGTCACC
ACTATGAGCCAGTTCTCACCTGCTTCTGCAGGAGCCATTGGTTGATGATG
TCAGGTGTCATAGATGTAGGTACAGTGGACTCTGGTGGCCACAGAAGTAC
TTTAGGTGGAAAGATGCTGGTTATGGGGAGTGATATGCCAGGGAAGCTGT
ATTGAATGAGCATTCTTCGGAAAACCTTGATAGATAGTTTTGGCATATGG
TTTACAGCATGAGAACAAGAGCACACACTGACAAGCAATTCTCCTTTTCT
ACCATCCTTCTCTGTCTTCTACTGTTGTTGTTTCTTACATATTCTGTCAA
AGATGGTATAATAGAGTGTGCAATCATGTGTGTGTGTGTTTTATAGAGAT
AGGTATTAAAGGTATGCTATTTGTGTGTGNGNGNGNNNNNNNNNNNTNNN
NNNNTTNNTTNTTNTTTTTTTTTTTTTTTTTTTTTTTATTNTTTTTNNTT
TTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTNTTNTTTTTTT
NNTTTNTTTTTTTTTTNTTTTTTTTTNNTTTTTTTTTTTTTNTTTTTTTT
TTTTTTTTNTTNNTTTTTTTTTTNTTTTNTNTTTTTTTTTTTTTTTTTNT
TTTTTTTTTTTTTTNTNTTTTTTTNTTTTTTTTTNTTTTTTTTTTTTTTT
TTTNTTTTTTTTTTTTTTTNTTTTTTTTTTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATTAACATCACACCAGTCAGAATGGCTAAGATGAAAA
ATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAATGCTC
CTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAAAATCCAGCAA
TACCTCTTCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCTTAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACACAATGAAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCTTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGAT
ATTAGCCCAAAAACTTACGATACCCCAGATATTAGATACCATTTGCTAAA
CACTTTAAACTCAAAAAAGAAAACCAAAGTGTGGACACTTTGCCCCTTTC
TTAAAAAGAAAAAAAACCCCCTTGGAAGAGGTTCCCAGACAAAATTTTTA
CGGGGCCAAAGGGGGGGAATCCTCCTGTTTGCCATACCTATAATCCCTCC
CTGGTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_f23.b1 MSMg01no396_f23.b1 CHROMAT_FILE:
MSMg01no396_f23.b1 PHD_FILE: MSMg01no396_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:29 2005
         (418 letters)



>mm_chr1_60913186_60914000
          Length = 815

 Score =  785 bits (406), Expect = 0.0
 Identities = 414/418 (99%), Gaps = 3/418 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaaccagtgtggacacctctcccacccccaactgtcaccactatgagccagttctcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaaccagtgtggacacctctcccacccccaactgtcaccactatgagccagttctcacc 260

                                                                       
Query: 61  tgcttctgcaggagccattggttgatgatgtcaggtgtcatagatgtaggtacagtggac 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 tgcttctgcaggagccattggttgatgacgtcaggtgtcatagatgtaggtacagtggac 320

                                                                       
Query: 121 tctggtggccacagaagtactttaggtggaaagatgctggttatggggagtgatatgcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctggtggccacagaagtactttaggtggaaagatgctggttatggggagtgatatgcca 380

                                                                       
Query: 181 gggaagctgtattgaatgagcattcttcggaaaaccttgatagatagttttggcatatgg 240
           |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||
Sbjct: 381 gggaagctgtattgaatgagcattc---ggaaaaccttgatagatagttttggcatatgg 437

                                                                       
Query: 241 tttacagcatgagaacaagagcacacactgacaagcaattctccttttctaccatccttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tttacagcatgagaacaagagcacacactgacaagcaattctccttttctaccatccttc 497

                                                                       
Query: 301 tctgtcttctactgttgttgtttcttacatattctgtcaaagatggtataatagagtgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tctgtcttctactgttgttgtttcttacatattctgtcaaagatggtataatagagtgtg 557

                                                                     
Query: 361 caatcatgtgtgtgtgtgttttatagagataggtattaaaggtatgctatttgtgtgt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 caatcatgtgtgtgtgtgttttatagagataggtattaaaggtatgctatttgtgtgt 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 815
Length adjustment: 9
Effective length of query: 409
Effective length of database: 806
Effective search space:   329654
Effective search space used:   329654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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