XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGTGC
TATTGTTAACATTTTAAATCATCTTCCTTATATGTTCATGGAATGAATTC
TCTAAATGATTATCCTTTCTTCTAAAGATGAATAGATTTTAGTTTTAAAT
ATGTTTATGTGTGTGAGTGAGTGTACATACATGGGCATGAGTGCCCTGAT
CACTGAGTTCAAAAATGCAATTCAGATACCTTAGAGTTAGATTTACTTAT
CATTTTGAATGTCAAGGTGTGAGTGTTGAGAAGTAAACTTGAATGTTGGA
CTCTCTAGTAGAGAGGTAAAAAAAAAAAAGACAAAAAACAAAAGAACCAA
CAAACTGTAACTAACTAAACATAAACACACATACACACAAACACACATTC
AACTTTGAAGGCCATTAGATGTTGATTAGTTATTTCTGAATATGTGAACT
GCCTAGTATTGTCTTATAAATCCAGTGTCACTTCATTGAGGAAAAATATT
TTTTTTCCTTTTTCAACAAGGATAAATGATACCTGAGTTATTAAATGTCA
TCCAAGTGGCTGTGTTTTCATACATTCATTCATTCATTTTTAAATATAAC
AAAATAAAATATAATAACATAAAATAAAACCTATCACATCATATTAAATA
AGACCAACCACCCGAAGGAATATAGCCCAAGAGAAGGCCCAAGATTCAAA
GACATACTCTATCTTGCACTCAGGAATCCCATAN

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCAACTGAGGAAAATTGAATGGCTGAGAAGCACCT
AAAAATGCTCAACACCCTTAATCATCAGGGAAATGCAAATCAAGACAACT
CTGAGATTCCACCTCATACCAGTCAGAATGGCTAAGATAAAAAATTCAGG
AGACAGTAGAGGCTGACAAGGATGTGGAGAAAGAGGAACACTCCTCCATT
GCTGGTAGGATTGCCAGTAGTACTATCACTCTGGAAATCAGTTTGGTGGT
TCCTCAGAAAATTGTATATTGTACTACCCGAAGATCCAGCAATACCAACT
GAACATATACCCAGAAGATGCTCCAACTTGTAATAAGGACACATGCTTTA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGGAAGAACCC
AGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGTTACATTTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCTTAG
ACAAATGCGTGGATCTGAAGGATATCATCTTGAGTGAGGTAATTCTATCA
CAAAAGAACATACATGACATGCACTCACTGATAAGTGATTATTAGACCAG
AACCTCATAATACCCAACCTACCAATTTAAATTTTTAGGAAGATAGAAAG
TCGATATTCTCATTTGGACCTTCTTGCGTGATGCGG

Query= MSMg01no396_g02.b1 MSMg01no396_g02.b1 CHROMAT_FILE:
MSMg01no396_g02.b1 PHD_FILE: MSMg01no396_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:29 2005
         (608 letters)



>mm_chr1_49676296_49677302
          Length = 1007

 Score = 1141 bits (590), Expect = 0.0
 Identities = 601/606 (99%), Gaps = 4/606 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagtgctattgttaacattttaaatcatcttccttatatgttcatggaatgaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcaagtgctattgttaacattttaaatcatcttccttatatgttcatggaatgaat 261

                                                                       
Query: 65  tctctaaatgattatcctttcttctaaagatgaatagattttagttttaaatatgtttat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tctctaaatgattatcctttcttctaaagatgaatagattttagttttaaatatgtttat 321

                                                                       
Query: 125 gtgtgtgagtgagtgtacatacatgggcatgagtgccctgatcactgagttcaaaaatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gtgtgtgagtgagtgtacatacatgggcatgagtgccctgatcactgagttcaaaaatgc 381

                                                                       
Query: 185 aattcagataccttagagttagatttacttatcattttgaatgtcaaggtgtgagtgttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aattcagataccttagagttagatttacttatcattttgaatgtcaaggtgtgagtgttg 441

                                                                       
Query: 245 agaagtaaacttgaatgttggactctctagtagagaggtaaaaaaaaaaaa---gacaaa 301
           |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 442 agaagtaaacttgaatgttggactctctagtagagaggtaaaaaaaaaaaaaaagacaaa 501

                                                                       
Query: 302 aaacaaaagaaccaacaaactgtaactaactaaacataaacacacatacacacaaacaca 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaacaaaagaaccaacaaactgtaactaactaaacataaacacacatacacacaaacaca 561

                                                                       
Query: 362 cattcaactttgaaggccattagatgttgattagttatttctgaatatgtgaactgccta 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cattcaactttgaaggccattagatgttgattagttatttctgaatatgtgaactgccta 621

                                                                       
Query: 422 gtattgtcttataaatccagtgtcacttcattgaggaaaaatattttttttcctttttca 481
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct: 622 gtattgtcttataaatccagtgtcacttcattgaggaaaaatattttttt-cctttttcc 680

                                                                       
Query: 482 acaaggataaatgatacctgagttattaaatgtcatccaagtggctgtgttttcatacat 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaaggataaatgatacctgagttattaaatgtcatccaagtggctgtgttttcatacat 740

                                                                       
Query: 542 tcattcattcatttttaaatataacaaaataaaatataataacataaaataaaacctatc 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcattcattcatttttaaatataacaaaataaaatataataacataaaataaaacctatc 800

                 
Query: 602 acatca 607
           ||||||
Sbjct: 801 acatca 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1007
Length adjustment: 10
Effective length of query: 598
Effective length of database: 997
Effective search space:   596206
Effective search space used:   596206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)