BAC Information

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BAC

Clone NameMSMg01-396G09
Chromosome1 (Build37)
Map Location 127,895,419 - 127,895,792
singlet/doubletsinglet
Overlap geneE030049G20Rik
Upstream geneActr3, Slc35f5, Lypd1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396G09.T7 (MSMg01no396_g09.b1)MSMg01-396G09.TJ (MSMg01no396_g09.g1)
ACCAG496986AG496987
length749771
length of high quality
(start - end)
231 (65 - 295)408 (63 - 470)
definitionCHROMAT_FILE: MSMg01no396_g09.b1 PHD_FILE: MSMg01no396_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:30 2005CHROMAT_FILE: MSMg01no396_g09.g1 PHD_FILE: MSMg01no396_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCGCTAAACGACTCCTTATGCGTAGTATCCGCGGAATCACTCTCTTTC
AATCAAGTTCAGNGCATCTAGNTTTATATTGAGGTCTTTTCTATTTTGCA
TATAACTTGAAGAGTATTAGCATTAACTCTTCTTTTANATCTGGTAGAAT
TCTGCACTAAACCCATATACCCAGGATTTTTTAAATGTCTTCTTAATTTT
AGTAGGGGTTGTAGACCTATTTAAAGAAGTGTTTGTATTGAGAATAGTAT
CCATTTCTTTGAAAATCTCCAGTTTGGTGGAGTCCAGGCTTTCAAAGTAT
GTTATTATGGCTCTCTGGATTTCCTTAGGGCTTGTTGCTAACCCCCTTTA
CGTTTCTAACTCCCCACCCAACATGTGCCTTTTACTTAAAGATTGGCCAA
CCTTATTGATTTTCTCAAAAAAAAAAAACACTGTGTATTATTTTTGTTGT
TCTTCCTATTCCATTGATTTCAGTCTAGTGTTCGGCTACTCCTTGGTGCC
TACTTCTCTTGGTTGTGACTTCTCTTCCCTTCTTCCCCTAGGCCTTCCAG
GCGCGTTGTAACATTACAACTATGTGACTTCCTCCCTTTTTTTCTTAACT
TTACGTACCTAGTGCTATGAACTTGCCTCTTTTTTTTGTTTTCTCTTGCG
CCACAAGGTCTTGCACGCTCGTATACTACCTTTTCTATTCTACTCCACAA
CCTCCTTTACCCTCCTTCCCAACATTTTTGACTTGTACATACCCCCCAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTGCCTTGACCCTAATGCAAACAAACAAACAAACAAA
CAAACAAACAAACAGCCCTGCCATCTCTCAGCTTAAAGACAGGGCAGGTT
GGAGAACTTTCCTCCTACATGGAAAGATGAGCTTTTGTCTTTCACTTGGG
TTTTGCAGACTGTCTGAAGCCTACATTAAGGAGAGTAACCTGCTTTACCT
GTTTACCAATCCAAAAGTTCACTTCACCCCCAACACACAGAAGCACCTAG
AACAATGTTTGAACAAGGATCTGACTTTTCCATTCTGATGCATAAAATCC
ATAAAATAAACCACTGTAGTAATTAAGGAGCCGGTATTTAGAGCTCGCAG
AAACGATGAATCGGGAAAGGGGATAGGACATCACCCAGTGCAAAGAATAA
AAGCACTTGTAGGATGTACTTAGCAGAAGACAACCTGTCAACCTCACCAC
TCACCAAGTGTGTGTGAGTGTGTGCGTTGTGCGTTGTTTTTGCTTCCCTC
TCCTTCATTTTTTTATTTCTTATCTTTTCTCTCTATATTTACATTTTCTC
TCTTCTATCATTTATTCTCATTATAATCCATTACTTCCTCATTCTATTTT
CTCTTTTTCCCATATCTCCTATATTAACCATTCCTTTCTTTTATTAACCT
AATTCTACAATTTGAACCCTTTTTCCTTCCTTCTCTTTCCATTTTTTTCC
CCTTTCTTTTTGTCTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_g09.g1 MSMg01no396_g09.g1 CHROMAT_FILE:
MSMg01no396_g09.g1 PHD_FILE: MSMg01no396_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:30 2005
         (408 letters)



>mm_chr1_127895185_127895992
          Length = 808

 Score =  694 bits (359), Expect = 0.0
 Identities = 371/375 (98%), Gaps = 2/375 (0%)
 Strand = Plus / Plus

                                                                       
Query: 35  caaacaaacaaacaaacagccctgccatctctcagcttaaagacagggcaggttggagaa 94
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 caaacaaacaaacaaacagccctgccatctctcagcttaaagacagggcaggttggagaa 294

                                                                       
Query: 95  ctttcctcctacatggaaagatgagcttttgtctttcacttgggttttgcagactgtctg 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctttcctcctacatggaaagatgagcttttgtctttcacttgggttttgcagactgtctg 354

                                                                       
Query: 155 aagcctacattaaggagagtaacctgctttacctgtttaccaatccaaaagttcacttca 214
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 355 aagcctacattaaggagagtaacctgctttacctgtttaccaatccaagagttcacttca 414

                                                                       
Query: 215 cccccaacacacagaagcacctagaacaatgtttgaacaaggatctgacttttccattct 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cccccaacacacagaagcacctagaacaatgtttgaacaaggatctgacttttccattct 474

                                                                       
Query: 275 gatgcataaaatccataaaataaaccactgtagtaattaaggagccggtatttagagctc 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gatgcataaaatccataaaataaaccactgtagtaattaaggagccggtatttagagctc 534

                                                                       
Query: 335 gcagaaacgatgaa-tcgggaaaggggataggacatcacccagtgcaaagaataaaagca 393
           ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gcagaaatgatgaaat-gggaaaggggataggacatcacccagtgcaaagaataaaagca 593

                          
Query: 394 cttgtaggatgtact 408
           |||||||||||||||
Sbjct: 594 cttgtaggatgtact 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)