BAC Information

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BAC

Clone NameMSMg01-396H12
Chromosome1 (Build37)
Map Location 59,277,599 - 59,451,423
singlet/doubletdoublet
Overlap geneAls2, Als2cr7
Upstream geneAox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4
Downstream geneFzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396H12.T7 (MSMg01no396_h12.b1)MSMg01-396H12.TJ (MSMg01no396_h12.g1)
ACCAG497039AG497040
length770762
length of high quality
(start - end)
336 (65 - 400)492 (65 - 556)
definitionCHROMAT_FILE: MSMg01no396_h12.b1 PHD_FILE: MSMg01no396_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:36 2005CHROMAT_FILE: MSMg01no396_h12.g1 PHD_FILE: MSMg01no396_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,451,089 - 59,451,423)(59,277,599 - 59,278,092)
sequence
CGGCGCTAAACGACTCCTACTTTCATAACTACCGCGGAATCCAGATGTTA
CACAGACCTCAGNGAACACCCCTTCTGAAGGAGGCTCCAGAATAAAAGAG
TCCTGTACCCTCTGGGCTGGAGAAGACAACTTAGCCTGACTAAATCTCTC
AGGTCTTCTGGGGCGGAGAGGCACTGATGCTAGAGAGTCAGAGAACTCCC
AGTCAGGTGTGTCCTGCTGCTGAGAAATGTGACTTTGTCCCTTTTCTAGG
GTTGCAACCTTGGGAAATTTACAGTCACTCTTTTCTGAGCTTCAGTTTCC
TCCNATGAATACTGAGATAATGGTAGCAGCCACAACTTATCTGACTGACA
TCTGCCCTGAGGATGACGTCATGCGGCAGAGATGCAGCACTTTGCATACC
CACCCAGTGCCTGTACTAGGTCAACAATGACATTAGAGATGCAAATGAAG
TCACATAGCCCACACCAGGTATTTTCAATCCCAAGCTGGCATAACGACCT
GAAAAGGACAGTGTCTGTGGATAGACGTATGTCCCCTCCTCCACGCTGAT
GGAAGACAGTTGTGCGGCCTACCAGACATGACCATACATTGAGACTCGAC
ACTTTCCCGTAGCATGTTGTCCTTCTGGAGCCAACCTGCCTGTCGTTTTC
ATCTGGAACCCATCCCCTCCCCCACCCCCTCTCACCCTTGGCTCCCTTGC
CCCTTCTTCTAACGGCCGCTCCCTTTGTGGATCCGGTTCTTTGTTGGTCC
TTTTTATTATTCCTATTATN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAATCTGCAAATCAACATATTCAGTACAATCATAGAG
ACTGTGGTGATCGCAAATGATGTCCCCATCTATGTGAATCCTCGGTCCCC
AATTGGGAAGGCTTAGGAGATATAGCCTTGTTGGGGCAGGCTTTGAGGTT
TCAAGAGCTAAGTAGCATTCAATGTACTCTCTACCTTCTGTTTGCAGCTC
CAGATGTGAGCCCTCAGCTCTTGCTGCGACTCTGCCTTCCCTGTCAGCCC
TTTTTAATTTTAAGCCCAATTAAACATGTCCTTTTATAAGCTGCTATAGT
TATGGTATTTCATCACAGTGATAGAAAAGTAATACCTATATTAAGGTTAC
TTTTTAAGTACTCTGGAACATATAAAAACTTAAATTCCAACTGGGAAAGA
TTTTTTTTAAAAATCTCAGTAATGTATCATATCCAAGTCATTCTAATTTT
CAGTAATGAACACAAATGTTAATTATTCAATTTCTTTGTGTTTAACTAAA
ATACATTTTCCATTACTGGAACTTCTGTGTGAATTTCCCCCAAGACAACC
TCCATGCATTGCTACTAAGCTTCTTACCCTGGATGGTTTTTTTTAACCGT
GGACCTTGGTATGAGATGGTTTCCCGTCCCCTTTTCTGCCATTTTGTCCT
AACCCAGGCTGTAAAACTGCGCTGGATATAACCCTTTTTCTCCCATTTTT
CCCTTTAGCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_h12.b1 MSMg01no396_h12.b1 CHROMAT_FILE:
MSMg01no396_h12.b1 PHD_FILE: MSMg01no396_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:36 2005
         (336 letters)



>mm_chr1_59451059_59451794
          Length = 736

 Score =  588 bits (304), Expect = e-172
 Identities = 327/335 (97%), Gaps = 1/335 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaccccttctgaaggaggctccagaataaaagagtcctgtaccctctgggctggagaa 60
           |||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 365 aacacctcttctgaaggaggctccagaataaaagagccctgtagcctctgggctggagaa 306

                                                                       
Query: 61  gacaacttagcctgactaaatctctcaggtcttctggggcggagaggcactgatgctaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gacaacttagcctgactaaatctctcaggtcttctggggcggagaggcactgatgctaga 246

                                                                       
Query: 121 gagtcagagaactcccagtcaggtgtgtcctgctgctgagaaatgtgactttgtcccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gagtcagagaactcccagtcaggtgtgtcctgctgctgagaaatgtgactttgtcccttt 186

                                                                       
Query: 181 tctagggttgcaaccttgggaaatttacagtcactcttttctgagcttcagtttcctccn 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 185 tctagggttgcaaccttgggaaatttacagtcactcttttccgagcttcagtttcctcct 126

                                                                       
Query: 241 atg-aatactgagataatggtagcagccacaacttatctgactgacatctgccctgagga 299
           ||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 125 atgtaaaactgagataatggtggcagccacaacttatctgactgacatctgccctgagga 66

                                              
Query: 300 tgacgtcatgcggcagagatgcagcactttgcata 334
           |||||||||||||||||||||||||||||||||||
Sbjct: 65  tgacgtcatgcggcagagatgcagcactttgcata 31


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no396_h12.g1 MSMg01no396_h12.g1 CHROMAT_FILE:
MSMg01no396_h12.g1 PHD_FILE: MSMg01no396_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:36 2005
         (492 letters)



>mm_chr1_59277399_59278292
          Length = 894

 Score =  928 bits (480), Expect = 0.0
 Identities = 490/494 (99%), Gaps = 2/494 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatctgcaaatcaacatattcagtacaatcatagagactgtggtgatcgcaaatgatgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatctgcaaatcaacatattcagtacaatcatagagactgtggtgatcgcaaatgatgtc 260

                                                                       
Query: 61  cccatctatgtgaatcctcggtccccaattgggaaggcttaggagatatagccttgttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccatctatgtgaatcctcggtccccaattgggaaggcttaggagatatagccttgttgg 320

                                                                       
Query: 121 ggcaggctttgaggtttcaagagctaagtagcattcaatgtactctctaccttctgtttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaggctttgaggtttcaagagctaagtagcattcaatgtactctctaccttctgtttg 380

                                                                       
Query: 181 cagctccagatgtgagccctcagctcttgctgcgactctgccttccctgtcagccctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagctccagatgtgagccctcagctcttgctgcgactctgccttccctgtcagccctttt 440

                                                                       
Query: 241 taattttaagcccaattaaacatgtccttttataagctgctatagttatggtatttcatc 300
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taactctaagcccaattaaacatgtccttttataagctgctatagttatggtatttcatc 500

                                                                       
Query: 301 acagtgatagaaaagtaatacctatattaaggttactttttaagtactctggaacatata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagtgatagaaaagtaatacctatattaaggttactttttaagtactctggaacatata 560

                                                                       
Query: 361 aaaacttaaattccaactgggaaagatttttttt--aaaaatctcagtaatgtatcatat 418
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 561 aaaacttaaattccaactgggaaagattttttttttaaaaatctcagtaatgtatcatat 620

                                                                       
Query: 419 ccaagtcattctaattttcagtaatgaacacaaatgttaattattcaatttctttgtgtt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaagtcattctaattttcagtaatgaacacaaatgttaattattcaatttctttgtgtt 680

                         
Query: 479 taactaaaatacat 492
           ||||||||||||||
Sbjct: 681 taactaaaatacat 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 894
Length adjustment: 10
Effective length of query: 482
Effective length of database: 884
Effective search space:   426088
Effective search space used:   426088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)