Query= MSMg01no396_h12.b1 MSMg01no396_h12.b1 CHROMAT_FILE:
MSMg01no396_h12.b1 PHD_FILE: MSMg01no396_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:36 2005
(336 letters)
>mm_chr1_59451059_59451794
Length = 736
Score = 588 bits (304), Expect = e-172
Identities = 327/335 (97%), Gaps = 1/335 (0%)
Strand = Plus / Minus
Query: 1 aacaccccttctgaaggaggctccagaataaaagagtcctgtaccctctgggctggagaa 60
|||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 365 aacacctcttctgaaggaggctccagaataaaagagccctgtagcctctgggctggagaa 306
Query: 61 gacaacttagcctgactaaatctctcaggtcttctggggcggagaggcactgatgctaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gacaacttagcctgactaaatctctcaggtcttctggggcggagaggcactgatgctaga 246
Query: 121 gagtcagagaactcccagtcaggtgtgtcctgctgctgagaaatgtgactttgtcccttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gagtcagagaactcccagtcaggtgtgtcctgctgctgagaaatgtgactttgtcccttt 186
Query: 181 tctagggttgcaaccttgggaaatttacagtcactcttttctgagcttcagtttcctccn 240
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 185 tctagggttgcaaccttgggaaatttacagtcactcttttccgagcttcagtttcctcct 126
Query: 241 atg-aatactgagataatggtagcagccacaacttatctgactgacatctgccctgagga 299
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 125 atgtaaaactgagataatggtggcagccacaacttatctgactgacatctgccctgagga 66
Query: 300 tgacgtcatgcggcagagatgcagcactttgcata 334
|||||||||||||||||||||||||||||||||||
Sbjct: 65 tgacgtcatgcggcagagatgcagcactttgcata 31
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space: 237729
Effective search space used: 237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no396_h12.g1 MSMg01no396_h12.g1 CHROMAT_FILE:
MSMg01no396_h12.g1 PHD_FILE: MSMg01no396_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:36 2005
(492 letters)
>mm_chr1_59277399_59278292
Length = 894
Score = 928 bits (480), Expect = 0.0
Identities = 490/494 (99%), Gaps = 2/494 (0%)
Strand = Plus / Plus
Query: 1 aatctgcaaatcaacatattcagtacaatcatagagactgtggtgatcgcaaatgatgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatctgcaaatcaacatattcagtacaatcatagagactgtggtgatcgcaaatgatgtc 260
Query: 61 cccatctatgtgaatcctcggtccccaattgggaaggcttaggagatatagccttgttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccatctatgtgaatcctcggtccccaattgggaaggcttaggagatatagccttgttgg 320
Query: 121 ggcaggctttgaggtttcaagagctaagtagcattcaatgtactctctaccttctgtttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaggctttgaggtttcaagagctaagtagcattcaatgtactctctaccttctgtttg 380
Query: 181 cagctccagatgtgagccctcagctcttgctgcgactctgccttccctgtcagccctttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagctccagatgtgagccctcagctcttgctgcgactctgccttccctgtcagccctttt 440
Query: 241 taattttaagcccaattaaacatgtccttttataagctgctatagttatggtatttcatc 300
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taactctaagcccaattaaacatgtccttttataagctgctatagttatggtatttcatc 500
Query: 301 acagtgatagaaaagtaatacctatattaaggttactttttaagtactctggaacatata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagtgatagaaaagtaatacctatattaaggttactttttaagtactctggaacatata 560
Query: 361 aaaacttaaattccaactgggaaagatttttttt--aaaaatctcagtaatgtatcatat 418
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 aaaacttaaattccaactgggaaagattttttttttaaaaatctcagtaatgtatcatat 620
Query: 419 ccaagtcattctaattttcagtaatgaacacaaatgttaattattcaatttctttgtgtt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaagtcattctaattttcagtaatgaacacaaatgttaattattcaatttctttgtgtt 680
Query: 479 taactaaaatacat 492
||||||||||||||
Sbjct: 681 taactaaaatacat 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 894
Length adjustment: 10
Effective length of query: 482
Effective length of database: 884
Effective search space: 426088
Effective search space used: 426088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|