XXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCTACTC
CGGTGTCAGATTCCTGACCTTATATGGCACTGGTCCCCAACAGATGCCAA
ATGCTCAGGTCCCTACATTCTAAATGTTAGGTACCAAATTGACCTTTCTG
TAATCGATTTGTTTAATCCAGTGTTATTAAGAGCCAGCTGTTCCAGCATT
GATTGGATTGATGCGATGGCCCTGGGAAGCAGTCACTAGACATGTTCAAA
GTCACTAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGAC
CCAACCTTTTTTTTTTTTTAAACCACACCAACCCACGCTACAACACACCC
AATTTTATTTCCCCCCTCCCGCCATTTTGTGTTTCCCTATTTCTTTCTTC
TCTCCCTCTCTTCTTTTTTTTTTTTCCCTTTCCCACTTTTCATTCCCTTC
CCCTTTTTTTTTCATATTACCACCCCTTTCCCTCCTATTTTTTCCCCCCC
TCCCCCTTTTTTTCCCCCGCCCTTCTTTCTTACTCCTCTTCTCCCCCTTC
TCCTCCTTTTTTCCCTTTTCCCTTTTCCTTTTACCTAACTCTTCTATCTA
TATTCCCTTCTCCCCCTTTTTCTTCCCTTCTTTCTCTTTATTATCCTTTT
TATCTTCTCTACTCCTCCCTATACGCATCATTCATCTTTTCCCTCTCGTT
CTTTTTTCCCACCATCCTTTTTTTATTTTCCCTTTCCCCTCTCCCCCTTG
CTCCCTTTTCCCCCCGCCACTTTCCTTCTTTTTTTTCTTTATCCCCCCCC
CC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATTGCATGCCTGCAGTGGTAACACGGTAAACATGGG
GTGAACTGAAATATCTGGCTTGGCAAACAGAGTCCACAATATGGGGCCCG
GGATGCTTTTTCTAGACGCTGGTGTAAGTGAAGAAAACTAGAAGGCTTTA
TGATATTTTGTCAAGTGTGATAACTAGAATAAATGATAGTGTAGAAAATC
CTTTTCTCTCCAGTGACTCGAGCTCTACAGTTTGGCACTGGCTTCAAGTG
CTTAACAGAAAATATTTTTTCTGGATCATTTTAACATCACTCTTTTCCCT
TGTGACTTTATGACATTGAAAGGGGAGCTACTTAACATCCATCCCTGCCT
TTTGCCCATATGTTAAGAGCAGAGTGACTTGGGGTCAAATACATTACGAG
CTTTCTCTGTCTTTCTCATTATTCCTGATATGGTAGGACTTCCAAATATT
CAATTTTGAGATACATAAACAGCCTATAGAGTTTAAGTGGAATCCAAAAA
TAAAAAGCTCTGTAGCTCTTCCCGGAGATTTCTCACTACTTGGCTTTGAG
TTTTATCTAAAGAAGCCCTTTTGTGCCTTGGCTATAACAGAGGGTATACC
CTCTTAAACCTTATAAAAAAGAGCATCCCGTGGGACTTATAGGGTTCACA
AAGCTTTCTTGAAGGAGCATACTTACCGTTAGGCTG

Query= MSMg01no396_m01.b1 MSMg01no396_m01.b1 CHROMAT_FILE:
MSMg01no396_m01.b1 PHD_FILE: MSMg01no396_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:58 2005
         (234 letters)



>mm_chr1_170309624_170310257
          Length = 634

 Score =  418 bits (216), Expect = e-121
 Identities = 222/224 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctgaccttatatggcactggtccccaacagatgccaaatgctcaggtccctacattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tcctgaccttatatggcactggtccccaacagatgccaaatgctcaggtccctacattct 339

                                                                       
Query: 61  aaatgttaggtaccaaattgacctttctgtaatcgatttgtttaatccagtgttattaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aaatgttaggtaccaaattgacctttctgtaatcgatttgtttaatccagtgttattaag 279

                                                                       
Query: 121 agccagctgttccagcattgattggattgatgcgatggccctgggaagcagtcactagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agccagctgttccagcattgattggattgatgcgatggccctgggaagcagtcactagac 219

                                                       
Query: 181 atgttcaaagtcactaaagtgtgtgtgtgtgtgtgtgtgtgtgt 224
           |||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 218 atggccaaagtcactaaagtgtgtgtgtgtgtgtgtgtgtgtgt 175


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no396_m01.g1 MSMg01no396_m01.g1 CHROMAT_FILE:
MSMg01no396_m01.g1 PHD_FILE: MSMg01no396_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:58 2005
         (309 letters)



>mm_chr1_170133716_170134424
          Length = 709

 Score =  582 bits (301), Expect = e-171
 Identities = 307/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggatcattttaacatcactcttttcccttgtgactttatgacattgaaaggggagctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggatcattttaacatcactcttttcccttgtgactttatgacattgaaaggggagctac 260

                                                                       
Query: 61  ttaacatccatccctgccttttgcccatatgttaagagcagagtgacttggggtcaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaacatccatccctgccttttgcccatatgttaagagcagagtgacttggggtcaaata 320

                                                                       
Query: 121 cattacgagctttctctgtctttctcattattcctgatatggtaggacttccaaatattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattacgagctttctctgtctttctcattattcctgatatggtaggacttccaaatattc 380

                                                                       
Query: 181 aattttgagatacataaacagcctatagagtttaagtggaatccaaaaataaaaagctct 240
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 381 aattttgagatacataaacagccaaaagagtttaagtggaatccaaaaataaaaagctct 440

                                                                       
Query: 241 gtagctcttcccggagatttctcactacttggctttgagttttatctaaagaagcccttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagctcttcccggagatttctcactacttggctttgagttttatctaaagaagcccttt 500

                    
Query: 301 tgtgccttg 309
           |||||||||
Sbjct: 501 tgtgccttg 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)