BAC Information

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BAC

Clone NameMSMg01-396N07
Chromosome1 (Build37)
Map Location 50,582,704 - 50,582,972
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396N07.T7 (MSMg01no396_n07.b1)MSMg01-396N07.TJ (MSMg01no396_n07.g1)
ACCAG497312AG497313
length763755
length of high quality
(start - end)
274 (40 - 313)394 (69 - 462)
definitionCHROMAT_FILE: MSMg01no396_n07.b1 PHD_FILE: MSMg01no396_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:04 2005CHROMAT_FILE: MSMg01no396_n07.g1 PHD_FILE: MSMg01no396_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGAAATTTCCGTTATCTTATTTAGATAAGGCGACACATTACAGCTTCCAT
CCCTGTTCTCTTTTCTCATACAGTGAGATCTATGTAGAGACAAAATTACT
CTATCAGATCAAGTAAGTGTCAAAGTCAAACCTCATCTTACACATTTTGC
ATTTTGTATCTCCTTGAATTCATCTTTCAGCTCTGTGGAGGACATTTCAA
GTGGATTTCTGCTTATTCCTGGTTACATTGAATGATAATGCTGACTGAAA
TTATTTTCTGGATATTTTTTATTGTCAGGACTTGTAGTGCCTTGGAAATG
CAGTTACAGGGTTTTAAGAATTGGATTTGAAATGAATGAAATAGCTCAGA
ATGTCAGTGCTCACTATTTAAACTACATTTTAATTCTAATTCATAATGAA
TTTCTTATAAAGCATAGGGACACCCAACAGTAATTTTTACTCCTTTTACT
TGGTCTTTGTTTATCATGAAACCCCCACCTTTCATTAATGAAATGGGAAC
TTGGTAATTCTTTCTTTAGTCTTCTTTTAATTATTCCTCGTATAGGTGAA
CTCAGAAATTGAAAGTCCTCCTTAGCCAAATAACCACTTTAATATCCCCC
CCGTCTAAAAGGAAAAGAAATTAATAACCTTGAAATTTTTTCCAAGGGAC
TGCCTAATTTCAATTTGTCCATTAAAAACCCCCTTTTTCTCTTCCTTTAT
AAAAAAAAAAAAA
TGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAGGCCAGCCTGGGACATAGCAATTTTTAGGT
GAAGAAAAGCTTAAATCAGGGTGTGGTTGTATATGACTTTAATCTCAACC
TTCAGGAGACACAGACATGCCGATCTCTGATTTCAAGGTCAAGCTACAGA
GCAAGTTCAAGAACAGGCATACTTAGACTGTGAAGGAGTTAGAACAGAGA
AAGCTGTTGATAGTGTAATGGAACAGGAAGGCTGTGTTCCAGCTTCAGCA
ACTAGAATAATTTGTCAGCCTTGGCTTTAGAGTCAAGGAGATAAGGAACT
ATTGTGACAACTGATGCAGGTTAGCTAGAGCTAAGAAATTTGCAGTGATT
AAAATGAGATCAACATCGTTAAGGTGAAGTCTTCTGGGAAGTATTTTCTG
AGAGGACAAAGAAGCTGTGTTCTAGAATTAGCCAAGGTTGAATCTCATTC
TAGTAGTTGGACTTTGAAATGTGTTAGAGTCTCCCAGTTGGCACTGGTTT
GAAGCTATTACCCGCTTCTATTAGCACTCTGATGTCCGTACCTGCGACAT
TCCCCTTACGTCCCTTTGCTTAACCCTTTTCCCCTTTCGTCCCTTTTTTT
CCCCCCCTTTTTCCGTTCCTTCCTTTTATCACATTATTTCTTTCCTCTAA
ATTGCGCCTCTCTCGTCTCTCATTCATTCATTTTTTTTTTGTACTATTTT
TTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_n07.b1 MSMg01no396_n07.b1 CHROMAT_FILE:
MSMg01no396_n07.b1 PHD_FILE: MSMg01no396_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:04 2005
         (274 letters)



>mm_chr1_50582500_50583173
          Length = 674

 Score =  497 bits (257), Expect = e-145
 Identities = 266/269 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagaaatttccgttatcttatttagataaggcgacacattacagcttccatccc 64
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gaattccagaaatgacagttatcttatttagataaggcgacacattacagcttccatccc 414

                                                                       
Query: 65  tgttctcttttctcatacagtgagatctatgtagagacaaaattactctatcagatcaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgttctcttttctcatacagtgagatctatgtagagacaaaattactctatcagatcaag 354

                                                                       
Query: 125 taagtgtcaaagtcaaacctcatcttacacattttgcattttgtatctccttgaattcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 taagtgtcaaagtcaaacctcatcttacacattttgcattttgtatctccttgaattcat 294

                                                                       
Query: 185 ctttcagctctgtggaggacatttcaagtggatttctgcttattcctggttacattgaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctttcagctctgtggaggacatttcaagtggatttctgcttattcctggttacattgaat 234

                                        
Query: 245 gataatgctgactgaaattattttctgga 273
           |||||||||||||||||||||||||||||
Sbjct: 233 gataatgctgactgaaattattttctgga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)