BAC Information

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BAC

Clone NameMSMg01-396N11
Chromosome1 (Build37)
Map Location 6,763,564 - 6,763,805
singlet/doubletsinglet
Overlap geneSt18
Upstream geneNpbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946
Downstream geneLOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302, LOC665063, LOC665069, LOC100039408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396N11.T7 (MSMg01no396_n11.b1)MSMg01-396N11.TJ (MSMg01no396_n11.g1)
ACCAG497320AG497321
length765767
length of high quality
(start - end)
271 (36 - 306)244 (62 - 305)
definitionCHROMAT_FILE: MSMg01no396_n11.b1 PHD_FILE: MSMg01no396_n11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:04 2005CHROMAT_FILE: MSMg01no396_n11.g1 PHD_FILE: MSMg01no396_n11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCAACACCATCCGCGGAATTCCTGAT
TTTCCCAAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTT
TTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTA
TATAATGGATTACATTGATTGATTTTCGTATATTAAACCATCCCTGCATC
CCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGTTC
TTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATATTCA
TAAGATTAATTGTTCTGAAGTTCTCTATCTTTGTTGGGTCTTTCTGTGGT
TTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACT
TCCCACCCCCATCTTGTGAAATAGTTTGTGCAGAACTGGAATTAGATCTT
CTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGGTCCTGGGCTT
TTTTTGGCTGGGAGACTATTTATAACTGCTTCTATTTCTTTAGGTGATAT
GGGACTGTTTATAAGGTCCACTTGATCCCGATTTAACTTTGGAACCCGTA
ATCTGTCTCAAAATTTGTTCCTTTCCCCACATTTTTTCTTTTTTGTTTAA
TAATTCCTTTTCTACTAGAACCGAATGGTGTTTTTGAAATCTTTTTCAAC
TTGCTGGATTAAATTCTCCTTTTTTTATTTCACTTTGTTATTATTATTTA
TTCCCGATGTGCCCC
GTAGGCCTGGNGGNCGCCTGGTTTCATAATTTAGGNGACACTANAGAAGT
TCCAGCAAACATCTTTTCCCAGCATAGGAGTTATGATTACTTTGCAGAGA
AGGCTAGTGACTTTATAGAATACACTTTAAAATGAACTGTGCATGTTACT
GCTTTCAGAGTGACTACTTACAAAAAAGGACTAATACAAATGAAGCTAAT
TTCAATATATTGTATATTGTTCATGGCACTAATAAAAATTTATACTGACA
GTCTCATCTTCTTATTATTCTGTGTGCCAGCTACTATCATCACCATTAAA
AAATTTATTANTTCCACTGGCCCATCTTTAATCATCTTCCTTGTTAGCAT
TTCCACTTTTCCTCTAACATGTTCAGGTTACAGGTAGTGTAGAGAAAGCT
CCGCCCCCGTCCTCAGTCACAGCCAGAACATCACCTCAGCTCTCTTCCTA
CTACCACTGTCTGACATCGAAGCCCCAGGCCATTGTATCTACTCATTCTG
GTAACTGGCTCATGTGTTGGCAACCAGTCCACACTCATCCTCTAGTTAGG
AAAACATATTCTTCTGACCTCTGAAATAACTTTCTTATGTGACTCCTTAG
AGAGACAAATAAACTACAGGTCCTTGAGGTACATCTTTGTTTCTTATGAG
ATCTATTTACTGTTACCAATTTGGTCGGTTCCAGGTGACACGGCTATCCT
TGAAGCCCCCTTCAAACTTTCCTTTTCTTTTAAAATTTTTATTTTATTTT
TAAAAACCCCCCTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_n11.g1 MSMg01no396_n11.g1 CHROMAT_FILE:
MSMg01no396_n11.g1 PHD_FILE: MSMg01no396_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:04 2005
         (244 letters)



>mm_chr1_6763364_6764007
          Length = 644

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttttcccagcataggagttatgattactttgcagagaaggctagtgactttatagaat 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttttcccaacataggagttatgattactttgcagagaaggctagtgactttatagaat 260

                                                                       
Query: 61  acactttaaaatgaactgtgcatgttactgctttcagagtgactacttacaaaaaaggac 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 acactttaaaatgaactgtgcatgttactgctttcagagtgactactttcaaaaaaggac 320

                                                                       
Query: 121 taatacaaatgaagctaatttcaatatattgtatattgttcatggcactaataaaaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 taatacaaatgaagctaatttcaatatattgtatattgttcatggcactaataaaaattg 380

                                                                       
Query: 181 atactgacagtctcatcttcttattattctgtgtgccagctactatcatcaccattaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atactgacagtctcatcttcttattattctgtgtgccagctactatcatcaccattaaaa 440

             
Query: 241 aa 242
           ||
Sbjct: 441 aa 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)