Query= MSMg01no396_n15.b1 MSMg01no396_n15.b1 CHROMAT_FILE:
MSMg01no396_n15.b1 PHD_FILE: MSMg01no396_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:05 2005
(523 letters)
>mm_chr1_179009829_179010752
Length = 924
Score = 977 bits (505), Expect = 0.0
Identities = 519/524 (99%), Gaps = 1/524 (0%)
Strand = Plus / Plus
Query: 1 gccttcttgcactgtggacatatttaaagtcagggagatacatgggaggaaagagaaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccttcttgcactgtggacatatttaaagtcagggagatacatgggaggaaagagaaaga 260
Query: 61 tttctaaaaagttgtacatagataatagggggattataaatacatatcataaagaatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctaaaaagttgtacatagataatagggggattataaatacatatcataaagaatata 320
Query: 121 caactctcaacagttcaaagaaactgaacagtctgtcagttacagtctgtcagttacagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caactctcaacagttcaaagaaactgaacagtctgtcagttacagtctgtcagttacagt 380
Query: 181 ctgtcagttacagtctgccataaaaatgacaagtaaatgttacttgaaacagtcattgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtcagttacagtctgccataaaaatgacaagtaaatgttacttgaaacagtcattgtt 440
Query: 241 tcattctatg-tattaccccactaaatttaaaatgtcctaatagcagtcctctaagcact 299
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcattctatgctaaaaccccactaaatttaaaatgtcctaatagcagtcctctaagcact 500
Query: 300 tactgttaaaaatggatgtctggtgttctttagtactctgctttcagtaagagtgtgtgc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactgttaaaaatggatgtctggtgttctttagtactctgctttcagtaagagtgtgtgc 560
Query: 360 cacttcatcctaaaaagaaaagacaaactataactacatgttgtaagtactaataataca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacttcatcctaaaaagaaaagacaaactataactacatgttgtaagtactaataataca 620
Query: 420 aaaatttcaccatttttcagaaatcagagaacagtgcttacagatagaanagggcattaa 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 aaaatttcaccatttttcagaaatcagagaacagtgcttacagatagaaaagggcattaa 680
Query: 480 aatacactggtacacctcctatattgcttagcttcccctccatc 523
|||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 681 aatacactggtacacctcctatgttgcttagcttcccctccatc 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 924
Length adjustment: 10
Effective length of query: 513
Effective length of database: 914
Effective search space: 468882
Effective search space used: 468882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no396_n15.g1 MSMg01no396_n15.g1 CHROMAT_FILE:
MSMg01no396_n15.g1 PHD_FILE: MSMg01no396_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:05 2005
(517 letters)
>mm_chr1_179189658_179190574
Length = 917
Score = 946 bits (489), Expect = 0.0
Identities = 510/517 (98%)
Strand = Plus / Minus
Query: 1 tataggatttggcaagacaggattcctctatgcagcccaaactggccagtgattggttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tataggatttggcaagacaggattcctctatgcagcccaaactggccagtgattggttcc 658
Query: 61 ttgggcttatgaatggtggaaaactagatgctgtgttgggattacaataatcacctcctc 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 657 ttgggcttatgaatggtggaaaactagatgctgtgttggaattacaataatcacctcctc 598
Query: 121 agctcctgatgtaatcagggtgttttggagtcattaggcccaatgaaggatttctcaaat 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 agctcctggtgtaatcagggtgttttggagtcattaggcccaatgaaggatttctcaaat 538
Query: 181 ggtctttccctgggctgtttatcatcgatacagcgtacaacaatggtagcaggaagagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ggtctttccctgggctgtttatcatcgatacagcgtacaacaatggtagcaggaagagga 478
Query: 241 aaaggctgctccacctgttagaagccatggcaagtggtagcagcagccaagtcgtgggga 300
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aaaggcagctccacctgtaagaagccatggcaagtggtagcagcagccaagtcgtgggga 418
Query: 301 caggaggggatggtcatggcagttagaccatacagactgcaggactgtcacaaggcacca 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 caggtggggatggtcatggcagttagaccatacagactgcaggactgtcacaaggcacca 358
Query: 361 acaccaacagcctaagggttataatcatagctggtgctcagtgctgccaattattcagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 acaccaacagcctaagggttataatcatagctggtgctcagtgctgccaattattcagag 298
Query: 421 agccaactgttgcacttgaagacttctaggccactggcaaccaaagccagagtagtaagt 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 297 agccaactgttgcacttgaagacttctaggccactggcaaccaaagtcagagtagtaagt 238
Query: 481 gtcttaatccaagttcttaaaactgcttgattctggt 517
||||||||||||||||||||||||| |||||||||||
Sbjct: 237 gtcttaatccaagttcttaaaactgtttgattctggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
