BAC Information

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BAC

Clone NameMSMg01-396O07
Chromosome1 (Build37)
Map Location 149,383,850 - 149,614,511
singlet/doubletdoublet
Overlap genenone
Upstream geneB830045N13Rik, LOC100043240
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396O07.T7 (MSMg01no396_o07.b1)MSMg01-396O07.TJ (MSMg01no396_o07.g1)
ACCAG497360AG497361
length782750
length of high quality
(start - end)
243 (61 - 303)195 (107 - 301)
definitionCHROMAT_FILE: MSMg01no396_o07.b1 PHD_FILE: MSMg01no396_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:08 2005CHROMAT_FILE: MSMg01no396_o07.g1 PHD_FILE: MSMg01no396_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,614,268 - 149,614,511)(149,383,850 - 149,384,041)
sequence
GGCCGCTAAACGACTCACTAAATGCTAGAGGACCGCGGAAATCTAATTCT
ATCTACAAGCATGTCTTGGNGGAATTTTATTCTTAATCCTCAGTTTGGAA
AATATTAAACTTAATAGTAAATTTAAAAATGAAAGAAAATGTTATAGACA
CCCATATTTACATACCAAAGAGATGCTAGATGAAGGACTTCATATTAATT
TCTTATGAAGGGGTTTGCATCCCCAGAGGAGGAACAATTTTATGAACTAA
CCAGTACCCCCAGAACTCTCAGGGACTAAACCACCAAACAAAGAGTACAC
CTGTTTTGGTCACATGGCTCCAGCTGCATATGTAGCATAGGATGGCTTAT
TCGATCATCAATGGGAAGAGAGGCTCTTGGTCCTGTGAAGATACTATGAC
CAGCGCACGTTAATTCCTGGTCTGGAAGGCCCGAGCTGATGGACCACTAT
TATATAGTCAAGACGAACGCTCACGAGATATATAGTTTCTGCCCTAGATA
TCTGCCCAGCACATAATATTCGCTGCGCCAATACTATCATTTCTACCTTA
CCCTTAAATTTTTCTTATTATATTGTCTTATCCTTCTCCCCCCTACTTTT
CCTTCAGTATAATAATATGTAATTATATTCTTTTAGTCAAATTTATGTTT
TTTTGTTTTTTCTCCTTTCTCTACTTTTCTCCAGAATTATTTACTTTACT
TTTATTACTCTGTCCCCTCATCTGCCCCTATGTCACCCCCCCCTATTGCT
ATTATCTATTTTTTTTCTTTCTCCCCTTCTCG
GAGGCCTGGNGGNCGCCTGGCTTCAAACATAGGNGAACNANAGAAGGTAC
CAGCACCACCGNACNNANNNANGNANGCCACCNGAAGAGAGAACTAAATT
TATCGCTTTAGATAGATTTGTTTCAGATGTTACAGCAATGACATGTAGTA
TAATTAAAATATCAGGCAGAATTTAAAAATACTTTGTGTAATCCAAGCGA
TAATATTTATCAAGGTGTTTTAACTTTCTTGTTTTATGTGAATAATTAAT
AATGTAATTACAGGCAAGTTCTTTCTTATATATAATCAAAATGACTGGTT
TTTTTTTCTTAGAAANAATAAATAAATAAACAATAATAATATTAAATAAA
CCGTGGAAATAATAAGAAATCATGCTGCCAAAAAGCTATAGTTTATGCCC
ACACATACCTTATCAAAGTTCTGTCCATTGTTTGAATGAATAAACTTTTT
AAAATTTAGTGAGAGTGTTATGACATCTGTAACAGTTCCTAAGCAACATG
TGATGAACTATGAACGAGCTAATACATTTTGCAGAAATTATATCCAGGTC
TCTAAGGTGATTAATGCATTTCTGATATGATTGTTTATAAAGAAAATGTA
CATTAAAAAATATTATCGTATAGCACGTACGAATTAATCTTTATTTTTTT
TTATCTCTATGACTCCTTATTGTGATCGACTAAGTGATTCTACTCACTCT
TTTTAACCTTTCTTCACTCACTTTTATTATCCCTTTTACCATCCGATTTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_o07.b1 MSMg01no396_o07.b1 CHROMAT_FILE:
MSMg01no396_o07.b1 PHD_FILE: MSMg01no396_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:08 2005
         (243 letters)



>mm_chr1_149614155_149614797
          Length = 643

 Score =  410 bits (212), Expect = e-119
 Identities = 236/245 (96%), Gaps = 4/245 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtcttggngg-aattttattcttaatcctcagtttggaaaatattaaacttaatagta 59
           ||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 atgtctt-gtggtaattttattcttaatcctcagtttggaaaatattaaacttaatagta 299

                                                                       
Query: 60  aatttaaaaatgaaagaaaatgttatagacacccatatttacataccaaagagatgctag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aatttaaaaatgaaagaaaatgttatagacacccatatttacataccaaagagatgctag 239

                                                                       
Query: 120 atgaaggacttcatattaatttcttatgaaggggtttgcatccccagaggaggaacaatt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 238 atgaaggacttcatattaatttcttatgaaggggtttgcatccccagaggaggaacaaca 179

                                                                       
Query: 180 ttatgaactaaccagta--cccccagaactctcagggactaaaccaccaaacaaagagta 237
            | ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 atctgaactaaccagtacccccccagaactctcagggactaaaccaccaaacaaagagta 119

                
Query: 238 cacct 242
           |||||
Sbjct: 118 cacct 114


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no396_o07.g1 MSMg01no396_o07.g1 CHROMAT_FILE:
MSMg01no396_o07.g1 PHD_FILE: MSMg01no396_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:08 2005
         (195 letters)



>mm_chr1_149383650_149384244
          Length = 595

 Score =  325 bits (168), Expect = 1e-93
 Identities = 186/192 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagatagatttgtttcagatgttacagcaatgacatgtagtataattaaaatatcagg 60
           ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tttagatagatttgtttcagacgttacagcaatgacatgtagtgtaattaaaatatcagg 260

                                                                       
Query: 61  cagaatttaaaaatactttgtgtaatccaagcgataatatttatcaaggtgttttaactt 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaatttgaaaatactttgtgtaatccaagcgataatatttatcaaggtgttttaactt 320

                                                                       
Query: 121 tcttgttttatgtgaataattaataatgtaattacaggcaagttctttcttatatataat 180
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgtaacatgtgaataattaataatgtaattacaggcaagttctttcttatatataat 380

                       
Query: 181 caaaatgactgg 192
           ||||||||||||
Sbjct: 381 caaaatgactgg 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)