BAC Information

Click to search

BAC

Clone NameMSMg01-397J22
Chromosome1 (Build37)
Map Location 140,983,538 - 140,983,856
singlet/doubletsinglet
Overlap geneDennd1b
Upstream genePtprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623
Downstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397J22.T7 (MSMg01no397_j22.b1)MSMg01-397J22.TJ (MSMg01no397_j22.g1)
ACCAG497917AG497918
length793866
length of high quality
(start - end)
349 (64 - 412)319 (69 - 387)
definitionCHROMAT_FILE: MSMg01no397_j22.b1 PHD_FILE: MSMg01no397_j22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:06 2005CHROMAT_FILE: MSMg01no397_j22.g1 PHD_FILE: MSMg01no397_j22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCAT
TAGGGTTCCCACATGCCTGTAGTGTGTTCATGAGACACTAATACTAAATG
CATTCCTATGATAAGTCACAAAGAAGGGTACTGAAGTTTAAGGGAGAATG
ATCCCATAGGCTTATCTATTGGTTACTTTGTCCCCAGCTGGTAGAACTGT
TTGGAAAGGATTAGAAGGAATGGACTTGTTGGAGAAGGTGTGTCACTAGG
GTTTCAAAAGACACTCAGTATTTTCTGTCTGCCATGTTGGTTGTGGATTA
TAATGTGAACTCTCAGCTTTTTCTTTGCTCCTTATCATGGACTATAAGAC
AAATTCAATGCTTTCTTTGATAAGTTGCCTCTTTTATCACAGTAGTAGAA
AAGTAACTCTGACCACCATGTATAATGGTTAAGTCTAAATATGACACTTG
GAGACGCCCAAATAGCATGTTGAGCCAGCATGCTTTCTCTGCAAGTGTAA
CGGTTTTTTCGTTCTTCCTTTCCCTTCTGTGGTAAACACCCACTCCCATT
ATTTCTGGTGTTATCCCCCCATTTTGGCATAGCCTTTCCCTTATCCCTAT
ATTCCCTCGTCCGAACTATTCCATCTCCCCCGCTTCTCGTTTTTATTTTA
TTCCCCCCTTCATCCCCCTTATTCCTTCTTCATCTCTCCTCTCTTCTCTT
CTTTTTTTCCCCTTCTTTTTCCCCCCCCTTTCCCCTCTTCCTTATTTTCC
CCCCCCTCCCCTTTCCTTTATCCCCCTTCTTCTCCCCTCTTTT
TGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTACTCTCAAGATTGGGATTTTTTTTCGAAATC
TAATAGTTCTTTTGTTTCATTGTTACTAAAGTTTAAATTTTAATGGATTT
TAGTAGGTTTAACATTTTTTAGTATTGAAGTCATAGTGGGATAAATTTGT
GACTCCTTATATTTTATTAATTTTAAGAAACTGTTATAAGCCAAGGATGA
TGTATATTAAATGAAACATGAACAGACAGGTGTTATCTGTGATTAGATTA
GGTAGTAACCCAAATTTTTTTTTTTTGACTTTCATTTAATTAATTACTCA
GATTTTTATTCCTAATAAAGTTTGATTTTTATCATTTCTATTTTAAACGT
GTTAATACCACACCCCCCCCTACCATATATTTACTTATAGATGAAAATTA
TTAAACACTGGAGAAAAGTCCTTGGGGGAATCCCATGCTAAACTTTTCAG
TGGGGGAATAAATCCTTCCCTCCCCCTTCTTCAAAACATTTATATTTTCC
TTTCCCCTCATCTCCGGTGGGGTGGACGTCACCCCTTTTCGCGCCTCCAG
CCTTTTTCTCCTTACGTTGTTTTTCTCCTCCCCCCAACACACGCGCCTTT
TTTTCGCACTATCTTCCCTCTGTAATGTCGACATAATCCTTTTTATTCCC
CCCCCCTCCCCCCTTCTTTCTTTTTATTCCTTTCTGTCCCTTTATCATTC
ATTCTCCCACCCACGCCTTCTTTGTATTTACCAAAACGTCTCTTCCCTTT
TCTCCGCTGACTTCTTCTCTACGTCTTTTTCTAACTTTCCGCTTGCTTCG
TGTTCCTCTCCCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_j22.g1 MSMg01no397_j22.g1 CHROMAT_FILE:
MSMg01no397_j22.g1 PHD_FILE: MSMg01no397_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:06 2005
         (319 letters)



>mm_chr1_140983338_140984056
          Length = 719

 Score =  563 bits (291), Expect = e-165
 Identities = 312/319 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactctcaagattgggattttttttcgaaatctaatagttcttttgtttcattgttacta 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactctcaagattaggattttttttcgaaatctaatagttcttttgtttcattgttacta 260

                                                                       
Query: 61  aagtttaaattttaatggattttagtaggtttaacattttttagtattgaagtcatagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtttaaattttaatggattttagtaggtttaacattttttagtattgaagtcatagtg 320

                                                                       
Query: 121 ggataaatttgtgactccttatattttattaattttaagaaactgttataagccaaggat 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agataaatttgtgactccttatattttattaattttaagaaactgttataagccaaggat 380

                                                                       
Query: 181 gatgtatattaaatgaaacatgaacagacaggtgttatctgtgattagattaggtagtaa 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 gatgtatattaaatgaaacatgaacagataggtgttatctgtgattagattaggtagtaa 440

                                                                       
Query: 241 cccaaattttttttttttgactttcatttaattaattactcagatttttattcctaataa 300
           ||||||||||  |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccaaattttactactttgactttcatttaattaattactcagatttttattcctaataa 500

                              
Query: 301 agtttgatttttatcattt 319
           |||||||||||||||||||
Sbjct: 501 agtttgatttttatcattt 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)